Gene HMPREF0424_0266 details

Gene Information

• Locus tag: HMPREF0424_0266
• Symbol: rplF
• ID: 8709183
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 290786
• End bp: 291325
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 646482385
• Product: ribosomal protein L6
• Protein accession: YP_003373523
• Protein GI: 283782769
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCATCGC ATATTGGTAA GCTCCCCGTC GACATTCCTG CAGGCGTGGA AGTAAAGATT 
GAAGGTCAGT CCTTCAGCGT CAAAGGCGCT AAGGGTTCTG ATTCTTATGA AATTCCAGAG 
GGAATCACCG CAGCAGTCGC TGACAATCAG ATTGTTCTGA CTCCAGTTGA CGATTTGCGT 
CCAACTCGTG CAAAGCATGG TTTGGCTCGC GCAATTGTTG CTTCTATGGT GAAGGGTGTA 
CATGAAGGCT ACACCAAGAC TTTGGATATT GTCGGTACCG GTTATCGTGC AGTGATGAAG 
GGCAAGGGCA TTGAGTTCTC GCTCGGTTAT TCTCACACTA TTACCGTTCA ACCACCGGCA 
GGTATTGAGT TCGAGTTGCC AAATCCTAAC CAGGTAATCG TAAAGGGCAC CGATAAGCAG 
ACTGTTGGTC AGGTTGCTGC TAACATTCGT AAGCTTCGTG CTCCAGAACC TTACAAGGGT 
AAGGGTATTA AGTACACCGA TGAACGTATC CTGCGCAAGG CTGGAAAGGC TGGTAAGTGA 

 

Protein sequence

MASHIGKLPV DIPAGVEVKI EGQSFSVKGA KGSDSYEIPE GITAAVADNQ IVLTPVDDLR 
PTRAKHGLAR AIVASMVKGV HEGYTKTLDI VGTGYRAVMK GKGIEFSLGY SHTITVQPPA 
GIEFELPNPN QVIVKGTDKQ TVGQVAANIR KLRAPEPYKG KGIKYTDERI LRKAGKAGK