Gene HMPREF0424_0252 details

Gene Information

• Locus tag: HMPREF0424_0252
• Symbol: rplM
• ID: 8708828
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 279143
• End bp: 279592
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 646482371
• Product: ribosomal protein L13
• Protein accession: YP_003373509
• Protein GI: 283782755
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0102] Ribosomal protein L13
• TIGRFAM ID: [TIGR01066] ribosomal protein L13, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 36
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAAGACTT TCACACCGAA ACCAGCAGAT TTAACTCATG ACTGGTACAT CATCGATGCC 
ACTGACGTGG TACTTGGTCG TTTGGCCTCT CAGGTAGCAA TCTTGCTGCG TGGTAAGAAT 
AAGCCAACGT TTGCTCCTCA TGCTGATTCT GGCAATCACG TTATTATTAT TAACGCTGAA 
AAGATTGCTT TGACTGGCAA TAAGTTGAGC AAGGAACTGT ATTCCCACTC TGGTCGTCCG 
GGCGGCCTTC GTCGTGATAG CTATGCAGAG CTTTTGGAAA GGAATCCAAA GCGTATTATC 
ATGGCTGCCG TTAAGGGTAT GCTTCCAAAG AATCGTCTTG CTAAGGTGCA GCTTGACCGT 
CTTCGTGTGT TCACCGGAGC TGAGCATCCG CACACTTCGC AGAAGCCACA GGTCTTCGAG 
ATCGCTCAGG TCTCTCAGCA GGCTAAGTGA 

 

Protein sequence

MKTFTPKPAD LTHDWYIIDA TDVVLGRLAS QVAILLRGKN KPTFAPHADS GNHVIIINAE 
KIALTGNKLS KELYSHSGRP GGLRRDSYAE LLERNPKRII MAAVKGMLPK NRLAKVQLDR 
LRVFTGAEHP HTSQKPQVFE IAQVSQQAK