Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0243 |
Symbol | |
ID | 8709998 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 269194 |
End bp | 270423 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 646482362 |
Product | ImpB/MucB/SamB family protein |
Protein accession | YP_003373501 |
Protein GI | 283782747 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0389] Nucleotidyltransferase/DNA polymerase involved in DNA repair |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGCAT TTTATGCTTC TTTAGAAGTT GCAAGACACC CGGAGCTTAA AGGAAAGCCG CTTATTATCG GCACAGGCAA TCGCGCTGTT GTTTCTGCAG CAAGCTACGA AGCGCGCGCT TACGGCGTTA ATTCCGCTAT GCCCGTTGTT AAAGCTAGAA ATCTTTGTCC ACAAGGAATT TTCTTGCCAG TTGACATTCC TTACTATTCA AGCGTTTCCA AAAGTATTTT TGAAAATATT TTTTTGCATA TTACTAATCA AGTTGAAAAA GTTTCTGTTG ACGAATGCTA TATGAATGTT AAATCGGCTT TATTACAGTG GAAATCGCCT GTAAATATTG GAACTTGGGT ACGAAAAGAA GTATTTGAAA AGTATCATAT TACATGCTCG GTTGGCATTG CCAGCAATAA ACTTATTGCA AAGATGGCTT CAACTAATGC AAAACCTAAT GGAATGCTTC TTATTCCGCA AAAATGTAAT GAAGATTTTG TGTCAATAAT GCCCTTGCGC GCAATACCAG GAATTGGCTC ATCTTTAATA CATAAGCTTG AGGATTGGGG CTTATCTACT GTTGCGTCGC TTAAAAATGT TGACGAAGCA ACGCTTACTC GCATAACGGG TTCGCAAATC TTAGCAAGAA TGATATATCA ATCAGTTAGG GGCATAGACG AGCGCACTGT GACTGCACAT GCCCCTGAAA AATCCATTGG AACTGAGCGA ACTCTTGATA CAGATACCAC GAACGAGAAT GCTGTTAAAC AATTACTACA GCAATGCTGC AGCGAAGTAA CTCAACAGTT GCGAAACAGA AAACTTATGG CACGCACTAT AACGTTAAAA CTACGCTTTG GCGACTTGCA TTATGTTACT AGATCTTCTA CTTTGCAAAA CGCAACTGAT TCAACACACG AGTTTTACGA GCATGTCGTT GTTTTGCTTT CTAGAGCTAA TCCAACTGTG CATAATTACA TTCTTGGAGG CAATAACACA AAGCTTTTAA GCCCAGTTCG TTTAGCTGGT GTTACAGCGA ATAATCTTGT GCCAGCAAAC AAAGTTTCAC TTCAGCCTTC TCTAAACGAT ATTCTGGAGG AAAATACTCG CGAATCTAAA AATCCTACAC AAAACATCAT GTCCACAATG AATAAAAATA CTAGATTGCG TCACGCAGAA CACGCTTTAG ATGCCGTTCG CAAAAAATAC GGCAACAACG CTGCCCACAT TGGATTGTAA
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Protein sequence | MDAFYASLEV ARHPELKGKP LIIGTGNRAV VSAASYEARA YGVNSAMPVV KARNLCPQGI FLPVDIPYYS SVSKSIFENI FLHITNQVEK VSVDECYMNV KSALLQWKSP VNIGTWVRKE VFEKYHITCS VGIASNKLIA KMASTNAKPN GMLLIPQKCN EDFVSIMPLR AIPGIGSSLI HKLEDWGLST VASLKNVDEA TLTRITGSQI LARMIYQSVR GIDERTVTAH APEKSIGTER TLDTDTTNEN AVKQLLQQCC SEVTQQLRNR KLMARTITLK LRFGDLHYVT RSSTLQNATD STHEFYEHVV VLLSRANPTV HNYILGGNNT KLLSPVRLAG VTANNLVPAN KVSLQPSLND ILEENTRESK NPTQNIMSTM NKNTRLRHAE HALDAVRKKY GNNAAHIGL
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