Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0189 |
Symbol | |
ID | 8709834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 210750 |
End bp | 211640 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482308 |
Product | transcriptional regulatory protein, C-terminal domain protein |
Protein accession | YP_003373453 |
Protein GI | 283782699 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAGTGT TGCGCTTATC GCTATTTTTC GCAGTATGGT TTACAATTCC TGTAAAGGCT GAATTTGCTA CTACATCAAT TGTTTGTTGG AGGCATCATA TGACTGATAT CACATTGATG ACTTCGTGTG CTTCTCCCTC TTCAGTTTTA CCTTCACTTA CTTTGTTATC TCATAAAGTG CGTTTACTTT CTTTGGATAC GTCAAGTTTG GCAAAACTGC CCGCACAAAC CATTCTTTTG CTTGATGCGC GTGAGGATTT AGCTCTCGCT AAATCAATGT GTTCTTCTCT GCGTGTTGCA AATATTACGG TTCCTGTCAT ATTAGTTATA ACTGAGGGTG GTTTTACTGT AGTAAATCCT TCGTGGAACA TTTCTGATGT TGTGCTGACT AATGCTTCTC CTGCAGAAGT AGAAGGTCGT TTGCGTTTGG CTTCTTTGCA ACACGGATCT TCTGATGATT TATTTGTGCA TTCGCAAGGC TCTGAAATTG ATGATTCTTT CAATTCAGAC AATGGAACTA TGCGTTCTGG AGATCTCGTT GTAGATATGC GTAGCTACAC AGTGAGTTTG CATGGTCATC CTGTTGATTT AGCTTATAAA GAATTTGAAT TGCTGAAATA CTTTGTGCAG CATCCGCGCA GGGTGTTTAC TCGCACTCAT TTGTTGCAAG AAGTATGGGG CTACGACTAC TACGGTGGCA CTCGTACTGT AGATGTCCAT ATTCGTAGGC TCCGTGCAAA ACTTGGTGTT GAATATGAAC ATTTGATTGG CACAGTGCGT AATGTTGGCT ATCGCTTCGA TCCTTCGGAA TCAGATGAGA ATAGCGAGAT TTCCGAAAGC AGCATTGAAG ATGATTCTGA AAATGATGCA GATAAGCAGT CTGCGCAATA A
|
Protein sequence | MQVLRLSLFF AVWFTIPVKA EFATTSIVCW RHHMTDITLM TSCASPSSVL PSLTLLSHKV RLLSLDTSSL AKLPAQTILL LDAREDLALA KSMCSSLRVA NITVPVILVI TEGGFTVVNP SWNISDVVLT NASPAEVEGR LRLASLQHGS SDDLFVHSQG SEIDDSFNSD NGTMRSGDLV VDMRSYTVSL HGHPVDLAYK EFELLKYFVQ HPRRVFTRTH LLQEVWGYDY YGGTRTVDVH IRRLRAKLGV EYEHLIGTVR NVGYRFDPSE SDENSEISES SIEDDSENDA DKQSAQ
|
| |