| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0180 |
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| Symbol | gnd |
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| ID | 8709587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 199768 |
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| End bp | 201222 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482299 |
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| Product | 6-phosphogluconate dehydrogenase, decarboxylating |
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| Protein accession | YP_003373444 |
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| Protein GI | 283782690 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0362] 6-phosphogluconate dehydrogenase |
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| TIGRFAM ID | [TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAG CTCAGGCAAA TATTGGTGTT GTTGGTTTGG CTGCCATGGG TTCGAATTTA
GCGCGTAATC TTGCGCATCA TGGAAATACA GTAGCTGTTT ACAATCGTCA TTATTCGCGC
ACTGAAACTT TAATGAATGA GCATGGCAGT GAAGGTGCTT TTGTGCCTTC AAAAACTGTT
GAAGAATTTG TGGCTTCTCT CAAGCGTCCG CGCACCGCAA TCATTATGGT AAAAGCTGGT
GCTCCTACGG ATGCTGTTAT TGAAGAACTT GCAAATGCTA TGGAGCCTGG AGATATTATC
GTCGACGGCG GAAACTCTTA TTTTGAAGAT ACGATTCGCA GAGAGCGTGA CATTCGCGCG
CGTGGTCTTC ATTACGTTGG TTGCGGTGTT TCTGGTGGCG AAGAAGGTGC TTTGCGTGGT
CCTTCGATGA TGCCTGGTGG CACTGAGGAA TCTTGGAAGA CTCTTGGTCC TATTTTGAAG
TCTATTGCTG CTGTTGCTGA AGGTGAGCCT TGCGTAACGC ATATTGGTAC CGATGGTGCT
GGTCATTTTG TGAAGATGGT TCACAATGGC ATCGAGTACT CGGATATGCA GCTTATTGCC
GAAAGCTACG ATTTAATGCT TCGCGGTTTG GGCATGAAGT CCGACGAAAT CGCGGATGTG
TTTAGCGAGT GGAATAAGGG CGAGCTTGAT TCTTATTTGA TTGAGATTAC TGCGGATGTG
CTTCGCCAGA AGGATGCTAA GACTGGTAAG CCTTTGGTTG AGATGATGGT GGATCATGCT
GGCATGAAGG GCACTGGTAC TTGGACTGTA CAATCTGCGC TTTCGCTTGG CATACCAGTT
ACGGGTATCG CTGAAGCCGT GTTTGCTCGC GGACTTTCCA GTCAGGTTGC TTTGCGAGAA
GCTGCCGAAA GTCAAGGTTT GACTGGTCCG GATGTGCATT TTGATTTGAA CGATGCTGAG
CGTAAGGCGT TTATTGAGGA TATTCGCCAA GCTTTGTACG CTTCTAAGAT TGTTTCTTAT
GCTCAGGGCT TCGATGAGAT TGCGGCTGCT GCAATTGAGC ATGATTGGAA GATTGACCAG
GCTGCAGTTG CTCGTATTTG GCGAGGCGGC TGCATTATTC GCGCTCAGTT CTTGAACCGC
GTTTCCGAGG CTTTTGAGTC CGGTGAAGCA AGCGTTTCTT TGCTTTTTGC ACCGTACTTT
AAGGCTGCAA TTGAAAAGTC TCAAGCTGCT TGGCGTAGGG TTATTGCGCG TGCGGTGGAG
CATGGTGTGC CTGTGCCAGC ATTCTCTAGC TTGCTTGCAT ACTACGATGG TTTGCGTTCT
AAGCGTTTGC CGGCTTCGCT TATTCAGGCT CAGCGTGATT TCTTCGGTGC TCATACTTAC
GGTCGTATTG ACGAGCCAGG CGTATTCCAC ACTTTGTGGG CAGATCCTAA TCGCCCAGAA
GTAAAGCAAG ATTAG
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| Protein sequence | MTQAQANIGV VGLAAMGSNL ARNLAHHGNT VAVYNRHYSR TETLMNEHGS EGAFVPSKTV
EEFVASLKRP RTAIIMVKAG APTDAVIEEL ANAMEPGDII VDGGNSYFED TIRRERDIRA
RGLHYVGCGV SGGEEGALRG PSMMPGGTEE SWKTLGPILK SIAAVAEGEP CVTHIGTDGA
GHFVKMVHNG IEYSDMQLIA ESYDLMLRGL GMKSDEIADV FSEWNKGELD SYLIEITADV
LRQKDAKTGK PLVEMMVDHA GMKGTGTWTV QSALSLGIPV TGIAEAVFAR GLSSQVALRE
AAESQGLTGP DVHFDLNDAE RKAFIEDIRQ ALYASKIVSY AQGFDEIAAA AIEHDWKIDQ
AAVARIWRGG CIIRAQFLNR VSEAFESGEA SVSLLFAPYF KAAIEKSQAA WRRVIARAVE
HGVPVPAFSS LLAYYDGLRS KRLPASLIQA QRDFFGAHTY GRIDEPGVFH TLWADPNRPE
VKQD
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