Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0139 |
Symbol | |
ID | 8708940 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 161495 |
End bp | 162517 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646482258 |
Product | hypothetical protein |
Protein accession | YP_003373404 |
Protein GI | 283782650 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3118] Thioredoxin domain-containing protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTAGCA AAGCGCAAGG CATGAATCCT GGCGGATTTT CGCTTGCTGG GGCTGTAGAT TTAGAAGGCG TAAAGCGTCG CGTAGAAGCT CAAGCTAAGC AAGCTGCTAA AGCTGCATCG GGTTCTACTG GTTCTTCTGC TCCAAAAGCT GGCGGCTATG TAATCGATGT TAATGAGCAG TCTTTTCAGG CGATGGTGCA AACGTCTGTA AGTTTCCCAA TTGTTATTTT GCTTTGGCAA GCTAATGACG AGGCCTATTA TGATGTGGCG CAGAAATTAG CGGATGCTGT TAACGCGCTT GACGGTCGTA TGCAGTTAGC TCGTATCGAC TCTGATGAAA GCCCAAGTAT TGCTCAAGCA TTGCAAGCGC AGCAGCTTCC TGCAATTTAC GGTTTAATTG GCGGACGCCC TATGCCTATT GCGCAAGGTT TACCTAGCGA TGAGGAATTA CAGCAGATTT GTGGCACTAT TTTGCCGCAA TTGGTTCAGG TTGCTGAACG CTCTGGTGTT GCTGGAACTG CTCCTTTTGT GGAATCCTCG GTTGAGAAAA AGTCTGAAAC GTCTAAAGAT GCAGATCAAG ATAGTTCCGA GAATAATTCT GTTGAGAGTG TTCCACCTGC TCATGAGCAA GCTCATTCGC TTGCTATGAA GGGTGATTAT GAAGGTGCTG CACGTGAGTA TGCAAAAGTA ATGGAAGCGG ATCCTCATGA TGTGCTCGCA TCGCGTGAAC ATGCAAAAGC TTTGTTGCTT TCGCGTAATA CTAATACTGA TGTTGCTGCG GTTAGAAAGG CTGCTGGCGA TAATAAGGAT GATTTAGATT CGCAGCTTGC AGTAGCAGAT GTAGATATGA TTGACGGTCA TATTGATGAC GCTTTTGGGC GACTGCTTGA CTTCCTTGCA TCTGGTCATA AGAGTGATGC GGATGCTATT CGTTCTCGTA TGCTTGAGTA TTTTGCCATA CTTCCTGCAG ATGATGAGCG TCTTGCGCGC GCTCGTCGCC GTCTTGCAAT TCTTCTTTAC TGA
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Protein sequence | MSSKAQGMNP GGFSLAGAVD LEGVKRRVEA QAKQAAKAAS GSTGSSAPKA GGYVIDVNEQ SFQAMVQTSV SFPIVILLWQ ANDEAYYDVA QKLADAVNAL DGRMQLARID SDESPSIAQA LQAQQLPAIY GLIGGRPMPI AQGLPSDEEL QQICGTILPQ LVQVAERSGV AGTAPFVESS VEKKSETSKD ADQDSSENNS VESVPPAHEQ AHSLAMKGDY EGAAREYAKV MEADPHDVLA SREHAKALLL SRNTNTDVAA VRKAAGDNKD DLDSQLAVAD VDMIDGHIDD AFGRLLDFLA SGHKSDADAI RSRMLEYFAI LPADDERLAR ARRRLAILLY
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