Gene HMPREF0424_0139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0139 
Symbol 
ID8708940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp161495 
End bp162517 
Gene Length1023 bp 
Protein Length340 aa 
Translation table11 
GC content47% 
IMG OID646482258 
Producthypothetical protein 
Protein accessionYP_003373404 
Protein GI283782650 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG3118] Thioredoxin domain-containing protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTAGCA AAGCGCAAGG CATGAATCCT GGCGGATTTT CGCTTGCTGG GGCTGTAGAT 
TTAGAAGGCG TAAAGCGTCG CGTAGAAGCT CAAGCTAAGC AAGCTGCTAA AGCTGCATCG
GGTTCTACTG GTTCTTCTGC TCCAAAAGCT GGCGGCTATG TAATCGATGT TAATGAGCAG
TCTTTTCAGG CGATGGTGCA AACGTCTGTA AGTTTCCCAA TTGTTATTTT GCTTTGGCAA
GCTAATGACG AGGCCTATTA TGATGTGGCG CAGAAATTAG CGGATGCTGT TAACGCGCTT
GACGGTCGTA TGCAGTTAGC TCGTATCGAC TCTGATGAAA GCCCAAGTAT TGCTCAAGCA
TTGCAAGCGC AGCAGCTTCC TGCAATTTAC GGTTTAATTG GCGGACGCCC TATGCCTATT
GCGCAAGGTT TACCTAGCGA TGAGGAATTA CAGCAGATTT GTGGCACTAT TTTGCCGCAA
TTGGTTCAGG TTGCTGAACG CTCTGGTGTT GCTGGAACTG CTCCTTTTGT GGAATCCTCG
GTTGAGAAAA AGTCTGAAAC GTCTAAAGAT GCAGATCAAG ATAGTTCCGA GAATAATTCT
GTTGAGAGTG TTCCACCTGC TCATGAGCAA GCTCATTCGC TTGCTATGAA GGGTGATTAT
GAAGGTGCTG CACGTGAGTA TGCAAAAGTA ATGGAAGCGG ATCCTCATGA TGTGCTCGCA
TCGCGTGAAC ATGCAAAAGC TTTGTTGCTT TCGCGTAATA CTAATACTGA TGTTGCTGCG
GTTAGAAAGG CTGCTGGCGA TAATAAGGAT GATTTAGATT CGCAGCTTGC AGTAGCAGAT
GTAGATATGA TTGACGGTCA TATTGATGAC GCTTTTGGGC GACTGCTTGA CTTCCTTGCA
TCTGGTCATA AGAGTGATGC GGATGCTATT CGTTCTCGTA TGCTTGAGTA TTTTGCCATA
CTTCCTGCAG ATGATGAGCG TCTTGCGCGC GCTCGTCGCC GTCTTGCAAT TCTTCTTTAC
TGA
 
Protein sequence
MSSKAQGMNP GGFSLAGAVD LEGVKRRVEA QAKQAAKAAS GSTGSSAPKA GGYVIDVNEQ 
SFQAMVQTSV SFPIVILLWQ ANDEAYYDVA QKLADAVNAL DGRMQLARID SDESPSIAQA
LQAQQLPAIY GLIGGRPMPI AQGLPSDEEL QQICGTILPQ LVQVAERSGV AGTAPFVESS
VEKKSETSKD ADQDSSENNS VESVPPAHEQ AHSLAMKGDY EGAAREYAKV MEADPHDVLA
SREHAKALLL SRNTNTDVAA VRKAAGDNKD DLDSQLAVAD VDMIDGHIDD AFGRLLDFLA
SGHKSDADAI RSRMLEYFAI LPADDERLAR ARRRLAILLY