| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0134 |
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| Symbol | |
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| ID | 8709865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 155117 |
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| End bp | 156700 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482253 |
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| Product | amino acid permease |
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| Protein accession | YP_003373399 |
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| Protein GI | 283782645 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.91384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAGA CTGTGAATAG TGACATTAAT GTAGGTTCTA AACAAACAGA ATCTGCAGAG
ACGCACAATA GCACATCTTC TCATAATCAA TCTTCAAACC AATCTTCTCG CGTATCTGCG
CAAGAAAATG CAAGTAGCAA TACAAACCAA ATGGAGCGTA GTCTTACCAA GCGTCATGTG
CAATTTATTG CTATTGGCGG CACAATTGGA ACAGGTTTGT TCCTTGGTTC TGGAAAATCA
ATTAGCTTAA CAGGTCCGAG TATTGTATTC GTTTACATTA TTGTGGGCTT GATCATGTTC
CTGCTGATGC GTGGCATTGG TGAGCTAATG TACAAGGATC CAAACCAGCA TACTTTTATT
AGTTTTATTA CGCGTTATCT TGGCAGAGGT TGGGGTAATT TTGCTGGATG GTCGTATTGG
TTTGTGCTTG TACTTATTGG TATGAGCGAA ATTACGGCAG TTAGTACGTA TTGTGTCACA
TTCTTCCAAA CTTTCGATAT TGACGTAAGT CATTGGAAAT GGCTGATAGA AGTAGTATTT
TTAGCGGCTT TAGTGTGCAT AAATTTGGTA GCTGTAAAGC TATTTGGGGA AACTGAGTTT
TGGTTCTCAA TGATTAAAAT TACGCTAATT GTTGCTCTTA TTGTTACAGC CGTAGTTATG
GCTTTAATTG GTTACCATTA CTCTGCAACT CCTTTGCATG GTGGTGTAAT GAGTCCTGCT
GGTCACGCTG GATTAGATAA TATTTTCAAC AATTTCTCGC TTATGCCAAA TGGCTGGCTT
TCCTTCTTAA TGAGCTTCCA AATGGTGTTT TACGCGTACC AGCTTATTGA GTTTGTTGGT
GTGACTGTTT CGGAAACTAA GAATCCTCGC CAGGTTTTGC CAAAGGCTGT TAACGAGATT
ATTGTACGCG TTCTGGTTTT CTATGTTGGT GCTCTCATAG CGATTATGCT TATTGTGCCG
TGGCAACAGT TTAGGGCTAC GAATGCGGAA GGCGTATTTA TGTCACCATT CATTATGGTG
TTCCAATACG CGGGATTGCA TTGGGCTTCT GCGCTTGTGT TCTTTGTGGT TATTACAGCT
GCTTCTTCTG CGCTTAATTC TTTGCTGTAT TCTGCTGGTC GCCACATGTA TCAGATTGCG
CTTGAGTCAC CTTCGCCTCT TTTGGGTAAG TTGCGTAAGG TTTCACGCAC GAAGGTTCCT
GCTCGCGCGA TTTTGTTCTC GTCTGCTTTG ATTCTTCTTT CGCCAATTAT TAATTCGATC
CCTGGCATTC ATGGTGCGTT TATTTTGTTT GCTTCGGCTT CTTCTGCAGT GATAATCATG
ATTTATATTT TGATTATGGT TACGCATCGT AAGTACCGTG AATCTGCTGA TTTTATGCCA
GACGGTTTCG TTATGCCGCA TTATAAGCTT TTGAATTCTC TTACTATAGC GTTCTTTGCT
TTTGTGTATG TGACTTTGTT TATTAGCGAC GATACGCGAG CTTCTGCAAT TGGCGGACTA
GTGTGGCTCG TATTGTTCGG CGGATACTGC GCCTTACATC AACATTGGCA GAATCGCGAT
TTAGCTGAAG CTTTGGGGAA GTAA
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| Protein sequence | MSETVNSDIN VGSKQTESAE THNSTSSHNQ SSNQSSRVSA QENASSNTNQ MERSLTKRHV
QFIAIGGTIG TGLFLGSGKS ISLTGPSIVF VYIIVGLIMF LLMRGIGELM YKDPNQHTFI
SFITRYLGRG WGNFAGWSYW FVLVLIGMSE ITAVSTYCVT FFQTFDIDVS HWKWLIEVVF
LAALVCINLV AVKLFGETEF WFSMIKITLI VALIVTAVVM ALIGYHYSAT PLHGGVMSPA
GHAGLDNIFN NFSLMPNGWL SFLMSFQMVF YAYQLIEFVG VTVSETKNPR QVLPKAVNEI
IVRVLVFYVG ALIAIMLIVP WQQFRATNAE GVFMSPFIMV FQYAGLHWAS ALVFFVVITA
ASSALNSLLY SAGRHMYQIA LESPSPLLGK LRKVSRTKVP ARAILFSSAL ILLSPIINSI
PGIHGAFILF ASASSAVIIM IYILIMVTHR KYRESADFMP DGFVMPHYKL LNSLTIAFFA
FVYVTLFISD DTRASAIGGL VWLVLFGGYC ALHQHWQNRD LAEALGK
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