| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0105 |
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| Symbol | gatA |
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| ID | 8709278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 124132 |
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| End bp | 125673 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646482226 |
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| Product | aspartyl/glutamyl-tRNA amidotransferase subunit A |
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| Protein accession | YP_003373372 |
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| Protein GI | 283782618 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | [TIGR00132] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.693508 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAATA CTCAAGATTT AGTAAAGCTT TCTGCTGCCG ATATGGCAAA AGCTGTAAAA
GCTAAAGAAG TTTCTAGCCG CGAGCTTGTT GAAGCTCACT TGGCAGTAAT CGAAGCAGCC
GAGCCAGAAA TCAAAGCATT CTTGCATGTT TCTGCAGATG TTGCACTTGA ACAAGCAGAT
GCCTTTGATA AAAAGAATGC TAATGGCGAA GCTGAAGGCT TACCTGAGCT TGCAGGCGTT
CCAATTGCCA TTAAAGACAT GATTGTTACT AAGGGCATTC CTACTACTGC AGCCTCTAAG
ATTCTTGAAG GCTGGGTTCC ACCTTACGAT GCTACTGTTA TTGAAAAGCT CAAGGCAGCT
GGCATGCCAA TTCTTGGCAA GACTAATTTG GATGAGTTTG CTCAAGGTTC TTCTACCGAG
CATTCCGCTT ACCAAACCAC TTGCAACCCT TGGGATACTG AGCGCGTTCC TGGCGGTTCT
GGCGGCGGTT CTGCAGCTGC TGTTGCTGCA TTTGAGGCTC CTATTGCTTT GGGTACAGAT
ACTGGTGGCT CCATTCGCCA GCCAGGCGCT TTAACTGGTA CAGTCGGCGC AAAGCCAACT
TACGGCGGAG TTAGCCGTTT TGGCGCAATT GCCATGGCAA GCTCCTTGGA TCAGATTGGA
CCTGTTTCTC GTACCGTTCT TGATTCTGCG CTTTTGCAGG AAATTATCGG TGGTAACGAT
AGGCGCGATT CTACTTCTAT TCCAGCTCCT GTTCCTCCAA TGGCTCAAGC TGCTCGTGAG
GGTGCTCGCC GTGATTTGAA GGGCTTGAAG GTTGGTTTAG TTAAAGAGCT TAGTGGCGAC
GGATTCCAGC CGGGAGTTGA AGCACGCTTT AATGAAGCTG TGCAATTGCT TAAGGATATG
GGTGCAGAAG TAACAGAAGT CTCTTGCCCT CATTTCCCTT ACTCTTTGGC TGCTTACTAC
ATTATTATGC CTTCAGAAGT TAGCTCTAAT TTGGCTCGTT ACGACGGCAT GCGCTACGGT
TTGCGCGTAA TGCCGCCAGC AGACAAGCCT CAGACTGCTG CAAATATGAT GGCCGCAACT
CGTGAAGCTG GTTTCGGTGA CGAAGTAAAG CGCCGTATTA TTCTCGGTAC TTACGCGCTT
TCCGCTGGCT ATTATGATGC TTGGTATGGT TCTGCACAGA AAGTTCGTAC GCTTATTATT
CGCGATTTCG AAGAAGCGTT TAAGAAAGTA GATGTTCTTA TTTCTCCAAC AAGCCCTACA
ACGGCATTTA AGTTTGGTGA GAAGATGGAC GATCCACTTT CTATGTATAT GAACGATATT
GCTACGATTC CTGCAAACAT GGCTGGCGTT CCAGCTTTGA GCCTCCCAGC TGGCTTAAGC
GACGATGGTC TGCCTGTTGG TATTCAGATT ATTGCTCCGC AATGCCATGA TGAAAAGATG
TACAAGCCTG CAGCAGCGTT GGAAGCAGCG CTCGAAGAAA AGTGGAGCGG CCCAATCTGG
AAGTCGCTTA AAGCTGGTTG GCTCGATTCA TTGGCTAAGT AA
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| Protein sequence | MTNTQDLVKL SAADMAKAVK AKEVSSRELV EAHLAVIEAA EPEIKAFLHV SADVALEQAD
AFDKKNANGE AEGLPELAGV PIAIKDMIVT KGIPTTAASK ILEGWVPPYD ATVIEKLKAA
GMPILGKTNL DEFAQGSSTE HSAYQTTCNP WDTERVPGGS GGGSAAAVAA FEAPIALGTD
TGGSIRQPGA LTGTVGAKPT YGGVSRFGAI AMASSLDQIG PVSRTVLDSA LLQEIIGGND
RRDSTSIPAP VPPMAQAARE GARRDLKGLK VGLVKELSGD GFQPGVEARF NEAVQLLKDM
GAEVTEVSCP HFPYSLAAYY IIMPSEVSSN LARYDGMRYG LRVMPPADKP QTAANMMAAT
REAGFGDEVK RRIILGTYAL SAGYYDAWYG SAQKVRTLII RDFEEAFKKV DVLISPTSPT
TAFKFGEKMD DPLSMYMNDI ATIPANMAGV PALSLPAGLS DDGLPVGIQI IAPQCHDEKM
YKPAAALEAA LEEKWSGPIW KSLKAGWLDS LAK
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