| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0099 |
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| Symbol | |
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| ID | 8708821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 117956 |
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| End bp | 118762 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482220 |
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| Product | RNA methyltransferase, TrmH family |
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| Protein accession | YP_003373366 |
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| Protein GI | 283782612 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0566] rRNA methylases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.167605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGAAC CGAATCCAAT TACTTTGGCT GCAAAAGCTT CCGATGAGCC AGAATTTCGA
CCTATAGGAG TTGGCCCGTG GGAAGAAGAG CATCCAGGTG AGCCTCGTCC AGATAATCCA
GAATCGCCAA ATTATGATGC GCGGTTTAGC ACTGAATTAC TAGACGAAGG CGACCAGCGT
AACGTTCTAG ACCGCTACCG ATACTGGAAA GTAGAAGCCA TAAAAGCGGA TCTCGATTCT
AAAGGTCGTC ATGAGTTTGA AGTAGCTGTA GAAAATTGGA CTCACGATTT CAACATAGGC
TCTATGGTTC GCACTGCAAA TGCGTTTACA GCGAAAAAAG TGTATATTGT AGGGCCTCAT
AAATGGAATC GTAAAGGCTC GTTAATGACT GAGCTTTACC AATACGTTGA GTGCTGCCCA
ACTATTGAAA CTCTAGTAAC TAATTGGCGC GAAAATATAG TACGAGAAGC AGAAGAAGCG
CATCAACTTT TGCTTAAAGC ACAAGCAGAA GGCAACAAAG AAGCTGAAAA AATCGCAAAT
ATAAAGGAAC ACGACGCTAA AAACGCGCGC GTTATAGCGC TCGATATTAT TCCAGGTGCT
GTTGCTATGG AAAACTACAA GTTTCCTAAA CGTTGCCTTA TGCTTTTTGG TGCAGAAGGT
CCGGGTCTTT CTAAAAAAGC GTTAGAAATG GCGGATGACG TTGTTTATAT TTCGCAATTT
GGCTCTGTTC GCTCGCTAAA CGCAGGAGCA GCTGCGGCTG TTTCCATGCA CGCATGGATT
GCGCAACATG CAGCACCAAA TTGCTGA
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| Protein sequence | MHEPNPITLA AKASDEPEFR PIGVGPWEEE HPGEPRPDNP ESPNYDARFS TELLDEGDQR
NVLDRYRYWK VEAIKADLDS KGRHEFEVAV ENWTHDFNIG SMVRTANAFT AKKVYIVGPH
KWNRKGSLMT ELYQYVECCP TIETLVTNWR ENIVREAEEA HQLLLKAQAE GNKEAEKIAN
IKEHDAKNAR VIALDIIPGA VAMENYKFPK RCLMLFGAEG PGLSKKALEM ADDVVYISQF
GSVRSLNAGA AAAVSMHAWI AQHAAPNC
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