| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0089 |
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| Symbol | |
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| ID | 8709559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 105986 |
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| End bp | 106801 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646482210 |
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| Product | FAH family protein |
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| Protein accession | YP_003373356 |
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| Protein GI | 283782602 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000675246 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGAATTG CACGTTTTTC ATATAATGAA GTTCCGCAAT ACGCTTTCGT TCAAAAAGAC
AAAGCCGACG GTAAAGATTA TTTAGTAGCG CTTGAAGGTC ATCCTTTAAG CTCGCAAGGA
GTTAAACCAA CTGGTAAACG TTACGCGTTG GATGCGGATG GCGTGCGCTT GCTTGTACCT
GTAATTCCTT CGAAAGTTTA CGGCTTGGCA AAAAATTATG ATACACGTTC CGACGATGAG
CGCGCTACTT CTTCTGCGGC TTCTTCACAT ACTGCTGCAG ATATGGTGAT TTTTACAAAG
CCGAGCACTT CTGTAATAGG ACCTGACGAT CCGATTGTTA TTCCTACTTG CTCAAACGAC
ATGAATTTTG AGCCAGAAGT GGCAGTTGTT ATGGGCAAAA TCGCCAAAAA TGTGACGGCA
GATACTGCAA TGAATTACGT TTTTGGCTTT ACATGCGTAA ACGACGTAAC TTTACGAGAT
TGCGCAGGAA GCGACCCAAT GTGGACGCGC GCAAAAGGTT TCGACACTTC TTGCCCGCTT
GGACCTTGGA TTACAACCGA GCTAAATTGG CGCGATGCAC ATATTTCATT TACGCTTAAT
GGTGAAAATG TGCCAGAAGC GAGTGGCACC ACAGCTCGAC TTATTCACAG TATTCCTGAG
CAAATTGCTG CGATTTCAAG CTTCTCAACG CTTCTTCCGG GAGATGTGAT TTTGACAGGA
ACTCCATACC CGGCTGGGAC TTTACGCGCG GGTGACGAAG CTATCGTGCA CGTAGATGGC
ATTGGCTCTT TGCGAAACGT TGTTGTAAGT GAATAA
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| Protein sequence | MRIARFSYNE VPQYAFVQKD KADGKDYLVA LEGHPLSSQG VKPTGKRYAL DADGVRLLVP
VIPSKVYGLA KNYDTRSDDE RATSSAASSH TAADMVIFTK PSTSVIGPDD PIVIPTCSND
MNFEPEVAVV MGKIAKNVTA DTAMNYVFGF TCVNDVTLRD CAGSDPMWTR AKGFDTSCPL
GPWITTELNW RDAHISFTLN GENVPEASGT TARLIHSIPE QIAAISSFST LLPGDVILTG
TPYPAGTLRA GDEAIVHVDG IGSLRNVVVS E
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