| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0076 |
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| Symbol | |
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| ID | 8709204 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 90668 |
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| End bp | 92086 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646482197 |
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| Product | Mur ligase middle domain protein |
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| Protein accession | YP_003373343 |
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| Protein GI | 283782589 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0769] UDP-N-acetylmuramyl tripeptide synthase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.000000585492 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAAGCC GCGACCATGA ATCGCATAAA AAGTTGCGTC AAAATTTGCA TAAGCATTGG
TACAGTTTTG CAATGCCTGC TGTTGGTAAA CTTGTTTGCG CTCTTTCTAG GGTGCTACAT
CATGGCGGAA GCGCATTGCC GGGGAAAGTT ATTGAGAGCC TTGATTCCGG CTTTCTAGCG
CGTACTCTTG CATCATTACC ATACGGAATA GTTCTTATTT CCGGAACTAA TGGCAAAACT
ACCACAACGC GTATGGTAAC TTCTATGCTG CGTGACGCAG GGCTTAATGT ATTTACTAAT
CCAACCGGTT CAAACTTTAC TAGAGGAGTA GTGGCATCTC TTGCAAAAAT AATGCCGGCT
TTTGGCACAA AATTAAATGC GGATATTGCA GTTTTAGAGC TCGACGAAGC GTACGCAGTG
CATTTTGTAA ATCAAATCAA GCCTCGTTAT TCTTTATTGC TAAATGTTAT GCGAGATCAG
CTCGATCGAT TCGGCGAAAT TGACACAACT GCAAAACTAT TAAGCAATGT AGCTGCAGCA
ACTGAAGGAA CGGTAGTGCT AAATCGCGAA GATTCACGTA TTTGCGCGCT TGCAAAAGTT
GTTCCTTCCG GGACTTGTGT GCGGTATTTT GGTTTGGATG ACGCAGTAAA AAGCATGTTC
CCAACGGATG ATGATTTGCA CAATACTGCT GAAAAAAGCG AAAATTGCAA AGATACTGCA
GAAAGCAAGG CTAACAATCT TCCTAAAGCA GACGTTGTGC TTTCAAAAGT TGGAGACCAT
GAGGCCGAGT TTATACTTGA TGGCAAGAGT AAAACCACAT CTGTAAAACT CGACGGCGCT
TACAACATTT TCAACGCTGC TGCAGCTGCA ACAGTAGTTC GCGCTATATT AGCGGATGCT
ACAAAACAAA ATTCTGCGCT GCAAAAATTC GACGACGACG CGCTTATGGA AGCGATTTCG
CACGTAACTC CTGCTTTTGG TAGAGGAGAA GTAATTGAAG TTAATGGCGC TCCTGTTGAG
CTTGTTTTAG TGAAGAATCC TATTGGTTTT AGACTTGCGA TTGCTTCGGA CCATCCACAA
AATCACGATA CCATGATTGC AATTTGTGAC GAATACGCTG ACGGTAGAGA TATGAGCTGG
CTGTGGGACG TTGATTTTGC AAGCTTTAGC GGCACTGGAG TTGCGTGTGT TTCGGGCACT
CGCGCATGGG ATATGGCTTT GCGGTTGCAA TACGATAAGG TTGAGGCTCG CAATGTGAAT
ACGGATTTGG AAGAAGATGC TAAAGCTTTT GTAAATGGCG ATTTTAGTGG CAATACTAAA
AATGCTAAGC GCATATATTG CACGTATACT GCTATGCTTC GCGTGCGCGC TGCTTTAGCA
CAACTTGCGG AAGTTAAAGA CGTTGGAGTT GGGAAGTAA
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| Protein sequence | MSSRDHESHK KLRQNLHKHW YSFAMPAVGK LVCALSRVLH HGGSALPGKV IESLDSGFLA
RTLASLPYGI VLISGTNGKT TTTRMVTSML RDAGLNVFTN PTGSNFTRGV VASLAKIMPA
FGTKLNADIA VLELDEAYAV HFVNQIKPRY SLLLNVMRDQ LDRFGEIDTT AKLLSNVAAA
TEGTVVLNRE DSRICALAKV VPSGTCVRYF GLDDAVKSMF PTDDDLHNTA EKSENCKDTA
ESKANNLPKA DVVLSKVGDH EAEFILDGKS KTTSVKLDGA YNIFNAAAAA TVVRAILADA
TKQNSALQKF DDDALMEAIS HVTPAFGRGE VIEVNGAPVE LVLVKNPIGF RLAIASDHPQ
NHDTMIAICD EYADGRDMSW LWDVDFASFS GTGVACVSGT RAWDMALRLQ YDKVEARNVN
TDLEEDAKAF VNGDFSGNTK NAKRIYCTYT AMLRVRAALA QLAEVKDVGV GK
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