Gene HMPREF0424_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0076 
Symbol 
ID8709204 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp90668 
End bp92086 
Gene Length1419 bp 
Protein Length472 aa 
Translation table11 
GC content44% 
IMG OID646482197 
ProductMur ligase middle domain protein 
Protein accessionYP_003373343 
Protein GI283782589 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0769] UDP-N-acetylmuramyl tripeptide synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.85492e-07 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCAAGCC GCGACCATGA ATCGCATAAA AAGTTGCGTC AAAATTTGCA TAAGCATTGG 
TACAGTTTTG CAATGCCTGC TGTTGGTAAA CTTGTTTGCG CTCTTTCTAG GGTGCTACAT
CATGGCGGAA GCGCATTGCC GGGGAAAGTT ATTGAGAGCC TTGATTCCGG CTTTCTAGCG
CGTACTCTTG CATCATTACC ATACGGAATA GTTCTTATTT CCGGAACTAA TGGCAAAACT
ACCACAACGC GTATGGTAAC TTCTATGCTG CGTGACGCAG GGCTTAATGT ATTTACTAAT
CCAACCGGTT CAAACTTTAC TAGAGGAGTA GTGGCATCTC TTGCAAAAAT AATGCCGGCT
TTTGGCACAA AATTAAATGC GGATATTGCA GTTTTAGAGC TCGACGAAGC GTACGCAGTG
CATTTTGTAA ATCAAATCAA GCCTCGTTAT TCTTTATTGC TAAATGTTAT GCGAGATCAG
CTCGATCGAT TCGGCGAAAT TGACACAACT GCAAAACTAT TAAGCAATGT AGCTGCAGCA
ACTGAAGGAA CGGTAGTGCT AAATCGCGAA GATTCACGTA TTTGCGCGCT TGCAAAAGTT
GTTCCTTCCG GGACTTGTGT GCGGTATTTT GGTTTGGATG ACGCAGTAAA AAGCATGTTC
CCAACGGATG ATGATTTGCA CAATACTGCT GAAAAAAGCG AAAATTGCAA AGATACTGCA
GAAAGCAAGG CTAACAATCT TCCTAAAGCA GACGTTGTGC TTTCAAAAGT TGGAGACCAT
GAGGCCGAGT TTATACTTGA TGGCAAGAGT AAAACCACAT CTGTAAAACT CGACGGCGCT
TACAACATTT TCAACGCTGC TGCAGCTGCA ACAGTAGTTC GCGCTATATT AGCGGATGCT
ACAAAACAAA ATTCTGCGCT GCAAAAATTC GACGACGACG CGCTTATGGA AGCGATTTCG
CACGTAACTC CTGCTTTTGG TAGAGGAGAA GTAATTGAAG TTAATGGCGC TCCTGTTGAG
CTTGTTTTAG TGAAGAATCC TATTGGTTTT AGACTTGCGA TTGCTTCGGA CCATCCACAA
AATCACGATA CCATGATTGC AATTTGTGAC GAATACGCTG ACGGTAGAGA TATGAGCTGG
CTGTGGGACG TTGATTTTGC AAGCTTTAGC GGCACTGGAG TTGCGTGTGT TTCGGGCACT
CGCGCATGGG ATATGGCTTT GCGGTTGCAA TACGATAAGG TTGAGGCTCG CAATGTGAAT
ACGGATTTGG AAGAAGATGC TAAAGCTTTT GTAAATGGCG ATTTTAGTGG CAATACTAAA
AATGCTAAGC GCATATATTG CACGTATACT GCTATGCTTC GCGTGCGCGC TGCTTTAGCA
CAACTTGCGG AAGTTAAAGA CGTTGGAGTT GGGAAGTAA
 
Protein sequence
MSSRDHESHK KLRQNLHKHW YSFAMPAVGK LVCALSRVLH HGGSALPGKV IESLDSGFLA 
RTLASLPYGI VLISGTNGKT TTTRMVTSML RDAGLNVFTN PTGSNFTRGV VASLAKIMPA
FGTKLNADIA VLELDEAYAV HFVNQIKPRY SLLLNVMRDQ LDRFGEIDTT AKLLSNVAAA
TEGTVVLNRE DSRICALAKV VPSGTCVRYF GLDDAVKSMF PTDDDLHNTA EKSENCKDTA
ESKANNLPKA DVVLSKVGDH EAEFILDGKS KTTSVKLDGA YNIFNAAAAA TVVRAILADA
TKQNSALQKF DDDALMEAIS HVTPAFGRGE VIEVNGAPVE LVLVKNPIGF RLAIASDHPQ
NHDTMIAICD EYADGRDMSW LWDVDFASFS GTGVACVSGT RAWDMALRLQ YDKVEARNVN
TDLEEDAKAF VNGDFSGNTK NAKRIYCTYT AMLRVRAALA QLAEVKDVGV GK