| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0068 |
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| Symbol | |
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| ID | 8709726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 80685 |
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| End bp | 81812 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646482189 |
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| Product | ABC transporter, ATP-binding protein |
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| Protein accession | YP_003373336 |
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| Protein GI | 283782582 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0372334 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGAAG TTGTATTTGA TCATGTGACT CGTATATACC CGGGCAACGA TAAGCCTTCG
GTTGATGACT TGAACATGAC TATTAAAGAT GGTGAGTTCC TCGTACTCGT TGGTCCATCT
GGTTGCGGTA AGTCAACTAC TTTGCGTATG TTGGCAGGTC TTGAAGAGGT TAACAAAGGA
CGTATCCTCA TCGGTGGTCA GGATGTTACT ACAATGCAGC CAAAGGATCG CGATATTGCA
ATGGTCTTCC AGAATTATGC ACTGTATCCG CATATGACAG TTGCTGATAA CATGGGCTTT
GCTTTGAAGA TTGCTGGTGT TCCTAAGGAA GAAATCCGCA AGCGTGTTGA AAAAGCTGCA
GAAGTGTTGG ATTTGACAGA GTATTTGGAT CGTAAGCCGA AGGCTTTGTC TGGTGGTCAG
CGTCAGCGTG TTGCTATGGG TCGCGCAATT GTTCGTGAAC CAAAAGTCTT CCTCATGGAT
GAGCCTCTTT CCAACCTCGA CGCTAAGCTC CGCGTTCAGA CTCGTACTCA GATTGCTGCT
TTGCAGCGTC AGCTTGGTGT TACTACTCTG TACGTTACCC ACGATCAGAC CGAAGCTTTG
ACCATGGGCG ATCGCATTGC AGTGATTAAG CTTGGCATAT TGCAGCAGGT TGGAGCTCCT
ACTGAGCTTT ATGACCGCCC TGCAAACGTA TTCGTTGCAG GCTTCATTGG TTCACCATCT
ATGAATATCA ATCAGCATCC AGTTGTAAAC GGTCGAGCTC AGATTGGTGA GGATTCTATA
CTTCTTCCAG CTGAGGCTGT TGACAAGCTC ACTGCAGAAG ATAACGGACA GATTATTGTT
GGCTTCCGTC CAGAAGATGC AAGCTTGGCA ACATCCGATG ATCCAAATGC GTTCTCCTTG
AAGGTAATGA ACGTGGAAGA TCTCGGTTCT GATGGCTATA TCTATGGCAA TATCATCACC
GATGGTTCTC CTGAGGAAGC ATCTACTATG ATGTCTGATC AAAATAAGCT CACGACTATT
CGCGTGAACC CACGTGCTCT TCCAAAGGTT GGCGACACCG TGAAGATCAA GATTGATCCA
TCTAAGATGC ATCTGTTCGC ACCTTCTACG GAGTTGCGTT TGAACTAA
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| Protein sequence | MAEVVFDHVT RIYPGNDKPS VDDLNMTIKD GEFLVLVGPS GCGKSTTLRM LAGLEEVNKG
RILIGGQDVT TMQPKDRDIA MVFQNYALYP HMTVADNMGF ALKIAGVPKE EIRKRVEKAA
EVLDLTEYLD RKPKALSGGQ RQRVAMGRAI VREPKVFLMD EPLSNLDAKL RVQTRTQIAA
LQRQLGVTTL YVTHDQTEAL TMGDRIAVIK LGILQQVGAP TELYDRPANV FVAGFIGSPS
MNINQHPVVN GRAQIGEDSI LLPAEAVDKL TAEDNGQIIV GFRPEDASLA TSDDPNAFSL
KVMNVEDLGS DGYIYGNIIT DGSPEEASTM MSDQNKLTTI RVNPRALPKV GDTVKIKIDP
SKMHLFAPST ELRLN
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