Gene HMPREF0424_0062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0062 
SymbolksgA 
ID8709666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp73420 
End bp74328 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content41% 
IMG OID646482183 
Productdimethyladenosine transferase 
Protein accessionYP_003373331 
Protein GI283782577 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0030] Dimethyladenosine transferase (rRNA methylation) 
TIGRFAM ID[TIGR00755] dimethyladenosine transferase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.142341 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTTACGAA ATTTGGACGG TAAAACTTTG ACAGAAATCA GCATTGAAAA TGAAGGTCAG 
CTTTTAGGTG CAGCAGATAT TAGACGTATT GCTGCCGAGG AAGGCATTAC TCCTACCAAA
AAGTTTGGTC AAAATTTCGT TATTGATCCT GGTACAGTGC GAAAAATAGT AGCGGCAGCT
GAAGTTAAAT CTGGCGATAT CGTTATGGAA GTAGGGCCTG GTCTTGGTTC TCTTACTCTT
GCAATATTGC AAACAGGAGC ACAGCTTACT GCAGTAGAAA TAGACCCTCC GCTAGCTCGA
CGATTGCCGC ATACTGTAGA AGAATTTATG CCTCAATCAA TGCAAAAATT TAACGTCATT
CTAAAAGACG CTTTGACAGT AAATGCCGAT GATGTTCCAC AGATTGCGCA GGCTAAACAA
TTTACTCTTG TTGCAAACCT GCCATACAAC GTTGCGACGC CTATTATTCT TACTTTGCTA
GAAAAATTTA GTAACTTACA GAATTTTCTA GTTATGGTTC AAAAAGAGGT AGCAGATCGT
TTATGCGCAC AACCTGGGAA TAAAGTATAT GGCACACCAA GTGTTAAGTT GGCGTGGTAC
GGCAAAGCCC AACGCGCAGG GCTTATCGGT CGTAATGTAT TTTGGCCATC GCCAAACGTT
GATTCAGCAT TAGTTTCTTT TACTCGCAAT TGCACAGGTA AAGGTGACAA TAATGAACGT
GAGGGAGTAT TCGCTTTCAT TGATGCCGCC TTCCAGCAAC GACGTAAGAC ATTGCACGCA
GCTCTTAAAA ATCAAGTTCC AGAAGAAGCA TATAAAAATT CTGGAATTGA CCCAACTAGA
CGCGGCGAGA CGCTTACTTG CGATGAATTT ATTGCTTTAT ATCGCGCATG CAAAGATTGT
AAATTATAA
 
Protein sequence
MLRNLDGKTL TEISIENEGQ LLGAADIRRI AAEEGITPTK KFGQNFVIDP GTVRKIVAAA 
EVKSGDIVME VGPGLGSLTL AILQTGAQLT AVEIDPPLAR RLPHTVEEFM PQSMQKFNVI
LKDALTVNAD DVPQIAQAKQ FTLVANLPYN VATPIILTLL EKFSNLQNFL VMVQKEVADR
LCAQPGNKVY GTPSVKLAWY GKAQRAGLIG RNVFWPSPNV DSALVSFTRN CTGKGDNNER
EGVFAFIDAA FQQRRKTLHA ALKNQVPEEA YKNSGIDPTR RGETLTCDEF IALYRACKDC
KL