| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0060 |
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| Symbol | |
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| ID | 8708758 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 71180 |
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| End bp | 72607 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482181 |
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| Product | tRNA adenylyltransferase |
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| Protein accession | YP_003373329 |
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| Protein GI | 283782575 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0617] tRNA nucleotidyltransferase/poly(A) polymerase |
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| TIGRFAM ID | [TIGR00277] uncharacterized domain HDIG
[TIGR02692] tRNA adenylyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.451798 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACTGAGA ACTTCGAAGT TTGGCCTGAA GCTATAGAGT TGGGGCGACT TTTTGCTGAG
CGTCATTATG AACTTGCATT AGTTGGTGGT CCTGTGAGAG ATATGCTACT GCATCGCGTG
TCGCATGATC TTGATTTTTG TACATCAGCT CGACCCGAAG AGTTTGAACC TATTTTGCGT
CGTTGGGGAC ATGATGGTTT TTGGGATATG GGTCGCAAAT TTGGCACGTT GGGAGCTATG
CGTCGACGTG CTGATGGTAC AGAAGTAAAA GTTGAAATTA CTACATACCG TTCTGATGTG
TACGATCCAG ATTCTCGTAA ACCTGAAGTG CAATATGGCG ATACTTTAGA AGGTGATCTT
TCTAGGCGTG ATTTTACTGT CAACGCAATG GCGTTGCGCG TGCCAGATTT ACAGTTTGTA
GATCCTTTTG GCGGTGCTAG TGATTTAGCT AAAGGCGTGT TGCGAACCCC GGTTGATCCT
CGTCAATCTT TTGATGACGA TCCTTTGCGT ATGATGCGTG CAGTTCGTTT TGTTGCGCAA
CTTGGGTTTA GTATCGAAGC AAATACTGCT GAAGCGATTG TGGACATGGC AGATAGGTTA
GATATTGTTT CTGCTGAAAG AATTCGCGAC GAAATTACTA AAATGTTACT TTCGGACAGA
CCTCGTAAAG GATTAGAAGC TCTTGTTGAA TCTGGTATAG CTCAGCGTGT TCTTCCGGAG
ATTCCAGCTT TACAGCTTGA AATTGACGAG CATCATCGTC ATAAGGACGT TTTTGAACAC
ACAATGATGG TTCTTGAGCG CGCTATAGCT TTGGAAACAG ATCAGGAAGG TCCAGTGCCG
TCTCCAGATT TAACGTTGCG TCTAGCTGCT TTATTGCATG ATATTGGGAA GCCAAAAACT
CGAAAATTTG AAGATGGAGG GAAAGTTAGT TTCCACCACC ATGATGTTGT TGGCGCAAAA
ATGACTCGTA AACGTTTGAA AGCACTGCAT TTTGATCATC ATCTTATCGA AGATGTTACT
GAATTAGTGA ATTTGCATTT GCGTTTTCAT GGGTATGTTG ATGAACCGTG GACTGATTCT
GCAGTTCGTC GTTACGTAAA AGATTCAGGA CATCTGTATG AGCGGTTGAA CCGACTTACT
AGAGCAGATG CAACCACTCA GAATCGTCGC AAATCGTTAA TGTTTGAGCA TGCGATGGAC
GAGATGGAAG AGCGCGTAAA GGAGCTTAAA AAGCAGGAAG ATTTTAACGC TATTAGACCT
GATGTAGACG GTAATGAAAT AATGCAATTA TTGCATTTGC AACCAGGTCC AACAGTTGGT
GAGGCTTATA AGCATATGCT TGATTATCGT CTCGATAATG GTCCGGTAGA CCATGATATT
GCTGTAGAAG AATTACAGCG ATGGTATGAG GAAACGTACA AAAAGTAA
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| Protein sequence | MTENFEVWPE AIELGRLFAE RHYELALVGG PVRDMLLHRV SHDLDFCTSA RPEEFEPILR
RWGHDGFWDM GRKFGTLGAM RRRADGTEVK VEITTYRSDV YDPDSRKPEV QYGDTLEGDL
SRRDFTVNAM ALRVPDLQFV DPFGGASDLA KGVLRTPVDP RQSFDDDPLR MMRAVRFVAQ
LGFSIEANTA EAIVDMADRL DIVSAERIRD EITKMLLSDR PRKGLEALVE SGIAQRVLPE
IPALQLEIDE HHRHKDVFEH TMMVLERAIA LETDQEGPVP SPDLTLRLAA LLHDIGKPKT
RKFEDGGKVS FHHHDVVGAK MTRKRLKALH FDHHLIEDVT ELVNLHLRFH GYVDEPWTDS
AVRRYVKDSG HLYERLNRLT RADATTQNRR KSLMFEHAMD EMEERVKELK KQEDFNAIRP
DVDGNEIMQL LHLQPGPTVG EAYKHMLDYR LDNGPVDHDI AVEELQRWYE ETYKK
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