| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0049 |
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| Symbol | yidC |
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| ID | 8708852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 56886 |
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| End bp | 57899 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482172 |
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| Product | membrane protein insertase, YidC/Oxa1 family |
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| Protein accession | YP_003373320 |
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| Protein GI | 283782566 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATC AAGATAACTT CATACTTGAT AATGGATTCT TGGGATGGTT TTATAAAATC
TTGACGCCAG TTGAGTGGCT CATGACTCAA ATTATGTCAT TATTCCATAA GTTATTAACT
CTTCTGGGAA TGAATGAAGT TGGCTTCTCT TGGGTTTTTT CCATCGTATT CTTGGTATTA
GTTGTGCATG CGTGCATTTT CCCTGCATTT ATTAAAAGCA TTAAAGGCAT GCGCAAAATG
CAAGCTATTG CGCCTAAGAT TAAGAAAATA CAGCAAAAAT ATAAAGGCAA AAATGATCCT
GCAAGTAAAG AAGCTATGCA GCGTGAAATG ATGAAGCTTT ATCAAGATAA CAAAGCCAAT
CCTGCTGGTT CGTGCCTACC TATGATGATT CAGGGTCCTG CATTTATGAG TATTTGGTAT
ACGCTTTCCG TTATTCCTTT TATTGCTCGT GGTAAGCATG CAGCTCTTGG TGCCTTTGAT
ATTGCAACAG CACAGCAATT CGTTAAAACT CGCGTATTTG GGGTTGGTGT TGCAGATACT
TTTATGACAA CTGCTGGCGC AGGTAAAATT GTCATAGTTA TATTTGTTGT ACTTATGTGT
GCTGCAATGT GGTACATGCA ATTCAATAAT ATTCGTAAGA ATCTTCCGCC TGAGTCTAAG
CAGGGTAGCC AATATACTGT ACAAAAGCTC ATGATGTGGG GATTCCCGTT GATTTACGTT
TTCTCTGCGT TTGCTATGCC ATTTGCAATG TTGGTTTACT GGTTAGTAAA CAATGTTATA
AATATGTTGC GTTCAATTTG GCAAGTTTAC GCATTCCCAA CTCCTGGATC TCCTGCAGCT
GAAGAAAAAG AAAAGCGTGA CTATCAAAAA GAAACTGCTC GTCGTGAGCG CGAAGGGTTG
CCTTCTATTG AAGAAGAGAA TCTTCAAAAA GCTCGTGAAG AAGCTGAGCG TAGAGAGATT
GAGGGATTCC AGCGCAAACA GCCACAACGT AAACGTAAGG TGGCAAAGCG CTAA
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| Protein sequence | MFNQDNFILD NGFLGWFYKI LTPVEWLMTQ IMSLFHKLLT LLGMNEVGFS WVFSIVFLVL
VVHACIFPAF IKSIKGMRKM QAIAPKIKKI QQKYKGKNDP ASKEAMQREM MKLYQDNKAN
PAGSCLPMMI QGPAFMSIWY TLSVIPFIAR GKHAALGAFD IATAQQFVKT RVFGVGVADT
FMTTAGAGKI VIVIFVVLMC AAMWYMQFNN IRKNLPPESK QGSQYTVQKL MMWGFPLIYV
FSAFAMPFAM LVYWLVNNVI NMLRSIWQVY AFPTPGSPAA EEKEKRDYQK ETARREREGL
PSIEEENLQK AREEAERREI EGFQRKQPQR KRKVAKR
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