| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0043 |
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| Symbol | recF |
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| ID | 8709255 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 50911 |
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| End bp | 52212 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 27% |
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| IMG OID | 646482166 |
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| Product | DNA replication and repair protein RecF |
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| Protein accession | YP_003373314 |
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| Protein GI | 283782560 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1195] Recombinational DNA repair ATPase (RecF pathway) |
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| TIGRFAM ID | [TIGR00611] recF protein |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATATTT CGCGAATTGC CCTTGATACA TTTCGTTCTT GGAACCATAT AATTTGTGAT
TTCAACCCTG GAATAAATGT TATATATGGC AATAATGGTT TAGGAAAAAC CAATATTGTA
GAAGCATTAG AAGTTACTGG TACTGGAATA AGTCACAGAA CATCTTCAAC ATTGCCTCTT
ATTAAAAAAG GCTATGAAAA ATCAATAATA AGAATAAATA CCATTAATAA TGATATAAAT
TATAAAAAAG ATGAAACAAA TACTGGCTTA AGTAATATTG CATCTTTAGA AAGTAATTTA
AATCAAACAA CTTATGAAAT AGATCTTTAT GTAAAAGGTT CTAATAGAGC ACATATAAAT
TCTGGTAAAG CATTATATGT TAAAGACATT GTTGGATTAT TGCCAATAGT TTCTTTTACT
CCAAGAGACC AATTTCTTAT AATTGGTGAT CCTAATGTTA GACGTACTTT TATCGATCAA
GCTGGATCTT TGTTAATACC AAATTATGTG CAATTATTGC AAGAATTTAA ACATATTTCT
AAACAGCGTG CTGCATTACT AAAAAATATT AGAGATTTTT CATACAAAAA TCAGACAGTT
TCATTATCCG GATTAGAAAT TTGGACTGGT AAATTTATTG AAAGTGGTAT TAACTTAACA
AAAGCACGCC AAGAAACTGT GCAAATTATT AATAAATATT TCAAAAATAT AATTAAATCT
TTTACTAATG AAGAAAATAC GGAAATAATA TATGTTCCTT CTTTTGAAGA AGTATTATTT
GAAAAAAAGA GTGATGAAAA TATTGAAGAT AAAAACGAGC TTTTTTCTAA AATAAGTGAG
CATTTTCAAC GTATTTATGA TGGAGAGCTA GCTAGAGGAT GCAATCTTAT TGGCCCTCAT
CGTGATGATA TTGACTTTGC TATTAATAAT ATTTCTGCTA AAGATTTTGC TTCGAATGGT
GAATCTTGGA CAATTGCAAT AGCTTCAAAA ATGGCATTAT GCAAGGCATT AGAAGAAAAA
AATAATGATA AACCTATTGT TATTCTCGAT GATGTATTTG CACAACTTGA TGAAAACAGG
CGTATAAGAA TATTAAATTT TGCACTTAAT CAAGGTCAAG TTTTTATTAC TACTTCTTCT
CTTAGCGACA TTCCTAATAA AGAATATATT AAAAAAACAA ATCTTATAAA TATTGGAAAA
CTATTAGAAA AAAATAATGA AATTAATAAT TTCAGTGAAG AGCATAATAA TATTTTGCTT
GATGTAATAG AACAAAGAAA AAATAAGCAG GAGGAAAAAT AA
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| Protein sequence | MYISRIALDT FRSWNHIICD FNPGINVIYG NNGLGKTNIV EALEVTGTGI SHRTSSTLPL
IKKGYEKSII RINTINNDIN YKKDETNTGL SNIASLESNL NQTTYEIDLY VKGSNRAHIN
SGKALYVKDI VGLLPIVSFT PRDQFLIIGD PNVRRTFIDQ AGSLLIPNYV QLLQEFKHIS
KQRAALLKNI RDFSYKNQTV SLSGLEIWTG KFIESGINLT KARQETVQII NKYFKNIIKS
FTNEENTEII YVPSFEEVLF EKKSDENIED KNELFSKISE HFQRIYDGEL ARGCNLIGPH
RDDIDFAINN ISAKDFASNG ESWTIAIASK MALCKALEEK NNDKPIVILD DVFAQLDENR
RIRILNFALN QGQVFITTSS LSDIPNKEYI KKTNLINIGK LLEKNNEINN FSEEHNNILL
DVIEQRKNKQ EEK
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