Gene HMPREF0424_0038 details

Gene Information

• Locus tag: HMPREF0424_0038
• Symbol: mscL
• ID: 8709265
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Gardnerella vaginalis 409-05
• Kingdom: Bacteria
• Replicon accession: NC_013721
• Strand: +
• Start bp: 44177
• End bp: 44587
• Gene Length: 411 bp
• Protein Length: 136 aa
• Translation table: 11
• GC content: 32%
• IMG OID: 646482161
• Product: large conductance mechanosensitive channel protein
• Protein accession: YP_003373309
• Protein GI: 283782555
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG1970] Large-conductance mechanosensitive channel
• TIGRFAM ID: [TIGR00220] large conductance mechanosensitive channel protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 31
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATAAAAG GATTTAAAAA ATTTATTTTA CGAGGCAGCG TAATCGACAT GGCTGTCGGT 
GTTGTTATGG GTAGTGCAGT AACTTCAGTA GTAACAACGA TAGTTAATTA TATTATTAAT 
CCTCTTATTG CAATGATTTT TGGAAAGCCA GAACTTAATG GTGTTCTAAC TATTAGTATG 
AATGGTGCAA CAATTTCTTT TGGCGCAGTA ATTGGAGCAT TATTGAATTT CCTTATTGTT 
GCTACAGCAG TTTATTTCTG CATTGTTTTA CCTATTAATA AATTGCGTGA AATTGGTGCA 
GATTTGTTGC AAATTGAACA TGAAAAAACT GAAGAAGAAA AAAGAAAAGA GCGTGAAGAA 
AAAACTATTC AACTGTTACA AGATATTCGT GACGAACTAG TAAAACGTTA A 

 

Protein sequence

MIKGFKKFIL RGSVIDMAVG VVMGSAVTSV VTTIVNYIIN PLIAMIFGKP ELNGVLTISM 
NGATISFGAV IGALLNFLIV ATAVYFCIVL PINKLREIGA DLLQIEHEKT EEEKRKEREE 
KTIQLLQDIR DELVKR