| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0025 |
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| Symbol | |
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| ID | 8709538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 29319 |
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| End bp | 30023 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 646482148 |
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| Product | peptidase, S54 (rhomboid) family protein |
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| Protein accession | YP_003373296 |
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| Protein GI | 283782542 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.777845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACAACT TTGATATTAA AAATATTTTA AATAATATAA GATTTCGTTT TAACACAACC
ACAGCCATTT TAGTATATTC ATGCATTTTT ATTTGGATAT TGGAAATGAT ACTGAACTTT
GCATATCCAA ATTATTATTC GACTCTAATA AGCTATACTG CGTTTCTTCC AATCACTGCG
TTACAGACAC CTTGGACTTG GTTCACATCA ATGTTTGTTC ACGCACCAAA TTTAACCCAT
ATTTTCTTCA ATATGCTATG TCTTTGGTCG CTCGGAGTTG AATTAGAACG ATTCTTCGGT
AAATGGAAGT TTTTTGGATT ATATTTAATA TCCGGCTTTG GCGGAAGCGT AGCTGATATT
GTATGGTGCA AACTCACTAA TAATTGGTTC GTCGCTTCAT ACGGTGCTTC GGGAGCTATT
ATGGGGCTTA TAGGCGCACT TCTCGTAGCA CAATGGCGAC TAGGAGAAAA CATGCGAGGA
ACAATTATTT GGATTGCTAT TACTCTCGCT ATGCCAATTA TTGTGCCTAA TATCGCTTGG
CAAGCACACA TTGGAGGCTT AGTTTCGGGT ACCGCAATTG CAGCATTGCT CGGAGTACAA
AATCCGCTAC TTAAAAAAGC TTCGTTTAAT ACGCGTTTCT TAGTGTATTT TGTATCACTA
TTTGCTATTC TCACTGCTTG TGCAATGTTT TGTTTGAAGG CATGA
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| Protein sequence | MHNFDIKNIL NNIRFRFNTT TAILVYSCIF IWILEMILNF AYPNYYSTLI SYTAFLPITA
LQTPWTWFTS MFVHAPNLTH IFFNMLCLWS LGVELERFFG KWKFFGLYLI SGFGGSVADI
VWCKLTNNWF VASYGASGAI MGLIGALLVA QWRLGENMRG TIIWIAITLA MPIIVPNIAW
QAHIGGLVSG TAIAALLGVQ NPLLKKASFN TRFLVYFVSL FAILTACAMF CLKA
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