| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0023 |
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| Symbol | glgP |
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| ID | 8709619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 26255 |
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| End bp | 28744 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646482146 |
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| Product | phosphorylase, glycogen/starch/alpha-glucan family |
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| Protein accession | YP_003373294 |
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| Protein GI | 283782540 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0058] Glucan phosphorylase |
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| TIGRFAM ID | [TIGR02093] glycogen/starch/alpha-glucan phosphorylases |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.785291 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAC ACGTCGCGCC GAAAGCCAAA ACTACTGCGA CGGCATTTGC CAAAGAACTT
CAAGAGCACC TCAAGTACAC CCAGGGTGTA ACGCCAGAGC AGGCCACTAC GGCAGATGTG
TATGTTGCCG CTGCTACCGC AGTTCGTCGT CACTTGATGG ACTCTTGGAT GCAGACTCAG
CATGACATGG TTAATGGCAA CACCAAGGCT GTGGGCTATT TGAGCGCAGA GTTCTTGATG
GGTAAGCAGC TTGAGAACGC TTTGTTGAAC GCTGGTCTTA CTGACCAATT CAATAAGGCT
GTTACTAAGC TTGGCTTCGA TCCAAAAGCT GTTATCGATG CCGAGTATGA ACCAGGTTTA
GGTAACGGCG GTTTGGGTCG TCTCGCAGCC TGCTTCATCG ATTCACTCGC CTCTATTGGC
GTTCCAGCAT TTGGCTACGG CATCCAGTAT CGTTACGGCA TCTTCAAGCA GCGCTTTGAT
GAAGAAGGTA AGCAGGTTGA AACCCCTGAT TACTGGCTTA GCAACGAAGA GCCATGGGGT
CACATTGATT ATGGTCGTGA CCAGCGCGTC AACTTCGGTG GTGAAGTTGT AGAGGAAAAC
GGCAAGCGCG TTTGGAAGCC AGCTTGGTCT GTTCGCGCAG TACCAGTTGA CTACATGGTT
CCAGGTTATA ATTCTGGTCG CGTAAATACT CTTCGTTTGT GGACCGCTAA GTCTTACGAT
GAGTTTGATT TGCTCACCTT CAACAAGTCC GAGTACTTGG ATGCTGTAAA GCCACAGGTT
GCAGCAGAAA ACATTTCTAA GATTCTTTAC CCAGAAGATT CCACTCCAGA AGGTAAGGCT
TTGCGTCTTG AGCAGCAGTA CTTCTTCGTA GCTGCTTCTA TTCATGATGC AATCCGCGTA
TTCTACCCAG GTCAGGATAA GCCGGATCTC ACTACCTTCC CAAGCAAGAT TAACTTCCAG
TTGAACGACA CTCACCCAGT TATCGGCATT CCAGAGCTTA TGCGCGTTCT TATGGACGAG
TACGGCTACG ATTGGAACAC CGCTTGGGGT ATCACCACCA AGACCTTCAA CTACACTTGC
CACACCTTGC TTCCAGAAGC TTTGGAAGTT TGGCCAGCCA AGCTTATTGG CGAACTGTTG
CCACGCCACC TTGAAATCAT TCAGGGCATT AGCGAGCAGT TCCGCAACGA GCTTCGCGGT
AAGGGCGTTG CTGAGGATCA GGTTGAGCGC ATGCGCATCG CTACCGACGC TGACGAAAAT
GGCGAAGGTG CTGTAGTTCG CATGGCTTAC TTGGCTACCT ACGGCGGTTC TTACGTTAAC
GGTGTTGCTG AACTTCACTC TGAGTTGTTG AAGGATGTCA CTTTGAAGGA CTTCTCCAGC
GTTTACCCAG ATAAGTTCAA GAACGTTACT AACGGCGTAA CTCCTCGTCG TTTCGTGCGC
TTGAGCAACC CACGCATGTC TGCTCTTATT ACTGAGGGCT TGGGCACAGA CGCATGGCAG
GGTAATTTGG AGCTTCTCGA AGGCTTGAAG CCATTGGCTG ACGACAAGGC GTTCGTTAAG
AAGTTTGCTG AAGTTAAGAA GCAGAACAAG CTTGCCTTCG TTGATTTCGC AAAGCAGAAG
TATGGCTTTG AGATCAACCC AGACACAATG TTCAACACCA TTGTTAAGCG TTTGCACGAG
TACAAGCGCC AGTCCATGAA GATCCTCCAG GTTATCTCCA CATACGCTGG AATCAAGAAT
GGCACAATCG ACGTAGACAA GATGCTTCCA CGCACCGTGT TCTTCGGCGC TAAGTCTGCT
CCAGGCTATG CTATGGCAAA GCTTACGATT CAGCTCATCA ACAATGTTGC TCGCGTTGTG
AACAACGACC CAGCTTGCAA GGGCAAGCTC GCAGTGTTCT TCCCACCAAA CTACAACATT
GAACTTGCTA TGAACTTGAT TCCTGCAACC GATTTGGATG AGCAGATTTC TCAAGCTGGT
AAGGAAGCTT CTGGCACTGG TAACATGAAG TTCGCTTTGA ACGGTGCTTT GACTGTTGGT
ACTCTCGATG GTGCAAATGT TGAGATTCGC GAGCGCGTTG GTGCTGAGAA CTTCTTCCTC
TTCGGCATGA CCGTTGACGA GGTTGAGAAG CTCTACGCTG AAGGCTATGA TCACGGCGGC
TCCCGTAAGT ACTATGAATC TGATCCTCGC TTGAAGACTG CTGTGGATAT GGTTGCTGAC
GGCACCTTCT CCAACGGCGA CAAGAGCGTG TATGAGCCAC TCGTTAACGA TTGGCTTACC
CATGATTACT TCATGGCAAT GGCTGACTTC AGCTCTTATA TGGATATTCA GGCTCAGATT
GAGGAAACTT ACCGCGATCC AATGAAGTGG GCTCGCATGG CAGTCTTGAA CGTAGCCAAC
TCTGGTTACT TCTCTTCTGA CCGCTCTATC GAAGATTACC TCGATCGCAT TTGGCACACG
GGTGCTCTTC CAACACCTGT TGCTGAGTAA
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| Protein sequence | MTKHVAPKAK TTATAFAKEL QEHLKYTQGV TPEQATTADV YVAAATAVRR HLMDSWMQTQ
HDMVNGNTKA VGYLSAEFLM GKQLENALLN AGLTDQFNKA VTKLGFDPKA VIDAEYEPGL
GNGGLGRLAA CFIDSLASIG VPAFGYGIQY RYGIFKQRFD EEGKQVETPD YWLSNEEPWG
HIDYGRDQRV NFGGEVVEEN GKRVWKPAWS VRAVPVDYMV PGYNSGRVNT LRLWTAKSYD
EFDLLTFNKS EYLDAVKPQV AAENISKILY PEDSTPEGKA LRLEQQYFFV AASIHDAIRV
FYPGQDKPDL TTFPSKINFQ LNDTHPVIGI PELMRVLMDE YGYDWNTAWG ITTKTFNYTC
HTLLPEALEV WPAKLIGELL PRHLEIIQGI SEQFRNELRG KGVAEDQVER MRIATDADEN
GEGAVVRMAY LATYGGSYVN GVAELHSELL KDVTLKDFSS VYPDKFKNVT NGVTPRRFVR
LSNPRMSALI TEGLGTDAWQ GNLELLEGLK PLADDKAFVK KFAEVKKQNK LAFVDFAKQK
YGFEINPDTM FNTIVKRLHE YKRQSMKILQ VISTYAGIKN GTIDVDKMLP RTVFFGAKSA
PGYAMAKLTI QLINNVARVV NNDPACKGKL AVFFPPNYNI ELAMNLIPAT DLDEQISQAG
KEASGTGNMK FALNGALTVG TLDGANVEIR ERVGAENFFL FGMTVDEVEK LYAEGYDHGG
SRKYYESDPR LKTAVDMVAD GTFSNGDKSV YEPLVNDWLT HDYFMAMADF SSYMDIQAQI
EETYRDPMKW ARMAVLNVAN SGYFSSDRSI EDYLDRIWHT GALPTPVAE
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