| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0016 |
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| Symbol | |
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| ID | 8709178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 17046 |
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| End bp | 18140 |
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| Gene Length | 1095 bp |
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| Protein Length | 364 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482139 |
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| Product | hypothetical protein |
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| Protein accession | YP_003373287 |
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| Protein GI | 283782533 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0701] Predicted permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000539047 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATCAAT CATCTAAAGA TACGCTTGAT GCAAATTCTG CAAATTCCAC TAATTCTGCG
AACTATCTTT TCTTGCTTGT CGGAGTTCCT TTAGTAGCTT TTATTATTGC AGCTGCTCCT
GCTTTACAAG GGCAACATCC TTGGTTTCTC GTTGATACAA CAATTCGAGG TGTTTCCGGA
TTGTTGCTAC AAGCTATACC TTTTACGCTC ATAGGTGTGC TTGTTTCTGC TGCAGTAGAA
ACTTGGGTAA CTGCTGATTT TATTGAGAAA CATGTTCCAA AATCTACAGC AAATGGTTTC
TTGGCTGCCA TATTAGCCGG CGTCTGTATG CCGGTTTGTG ATTGTGTAGT CGTTCCAACG
TTTTCTCGTT TAGTTGCAAG AAAACTACCA TTGCCGTGCG CCATAACTTT TCTATGTGCA
GTTCCTGTTG TAAATCCAGT ATCTGTATTG GCAACATTTT ATGCGTTTTC TGACGCTCCA
GCTGTTGCTA TTATGCGTAT TGCTCTAGGT GTTGGTATTG CATTATTAGT TGGATTAAGT
TTTGTTATAT TCCCTTCGAA AACCAATATT TTGCGTAAGA AAATTTTAGT AGAAAGCGAA
TCTTCTTTAC ATTGTTCTTG CGAATTGAAT AACGAAAGTA ATCTCACAAA AAATAATATT
GAAAAGCATA GTATTTCTGC GCAAATTCGC AAATATGTGC AGCATATACA TCAGGATTTA
ATAAAATTAA TTCCAATTAT TGTATGTGGA ACTATAGTTG CTTCTGTAAT TCGCGCATGG
CTCGGAGCTG ATCCTGCTTC TCGCGTGCAA GTGAGTAATG TTTTCATTGC TATTCCTGTA
ATGATGGCTA TTGCGTACGC AAGCTCTCTA TGCTCCAGCT CAGATGCTGT AATTGCAAGA
AGTTTAGCAA CATCATTGCC TATGTCGTCG GTGCTAGTAT TTCTGCTGTT TGGTCCTATG
CTTGATTTAA AGAATACGCT TATGCTCGTT GAGGATTGCT GTGGTAAATT TGTGTGGCGC
TTAACATTAA CTATTGCTTT TGCGTGCTTC CTAGCGTCAT TATTAGCTCA CTGGGCTTGG
GGGTTCATCG CATGA
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| Protein sequence | MNQSSKDTLD ANSANSTNSA NYLFLLVGVP LVAFIIAAAP ALQGQHPWFL VDTTIRGVSG
LLLQAIPFTL IGVLVSAAVE TWVTADFIEK HVPKSTANGF LAAILAGVCM PVCDCVVVPT
FSRLVARKLP LPCAITFLCA VPVVNPVSVL ATFYAFSDAP AVAIMRIALG VGIALLVGLS
FVIFPSKTNI LRKKILVESE SSLHCSCELN NESNLTKNNI EKHSISAQIR KYVQHIHQDL
IKLIPIIVCG TIVASVIRAW LGADPASRVQ VSNVFIAIPV MMAIAYASSL CSSSDAVIAR
SLATSLPMSS VLVFLLFGPM LDLKNTLMLV EDCCGKFVWR LTLTIAFACF LASLLAHWAW
GFIA
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