| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0014 |
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| Symbol | |
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| ID | 8709704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 14907 |
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| End bp | 16202 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482137 |
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| Product | CBS domain protein |
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| Protein accession | YP_003373285 |
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| Protein GI | 283782531 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000513416 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGATTG GTTTTAATAT TCTACTCATT ATGATTTTTT TGCTATTTGG TTCCGTATTT
GCGGCAACCG AATTAGCTTT AGTGAGCTTG AGAAGTTCGC AAATTGATCG CATGGAATTG
CAGGATGCGC GTGGTGCTAG AGTTGCAAAA ATTGCCCGCG ATCCTAACAC TTTTCTATCT
GCTCTACAAA TTGGAGTAAC TCTTTCTGGC TTTCTTTCTG CATCGTTTGG TGAGTCTGCT
TTAGCTCCGT ATGTTGTGCC GGTTGTATGT TCATGGGGTG TTTCTTCGCA CGTTGCTGGT
CCACTTACAA CAATCTTTCT AACTCTTGTT ATTTCTTACT GTTCTATTGT TATTTCTGAA
TTAGTTCCAA AACGTATTGC TATGCAGCGT GCTGAGCAGA TTGCGCGAGC GGTTGTGCCG
GCGGTTGATG TTTTCTCAAA GATTTGCAAG CCTTTAATTT GGCTTATTGG AAAGAATACT
AACGGTTTTG TGCGCATTCT TGGCTTTGAT CCTAATGAGA AGGAAAGCGA AGTTTCTGAC
GAAGAATTGC GCGTGCTTGT CAATAGCAAT AAGCGTTTAA GTCAAGATGA GCGCACTATT
TTGGATGATG TGTTTGATGC GTCTGAAACT ATTGTTGCTG AAGTAATGCG TCCTCGTGCT
GATGTTGAGT TTTTGGATGG TTCATTGAGC CTTGAAGAAG CTGCCGCGAA AATTCGTGAG
CTTCCGTATT CTCGCTACCC TGTTATTGGC AAAGATTTTG ATGATGTTAT AGGTTTTGTG
CATGTTCGTG ATTTGCTAGA TGTGCGTGAT CCAAATGCAA AAACTGTTGC AGATGTAACT
CGCGAAGGAA TTAGTCTTCC TGGAACTTCC AAACTATTGC CGAGCCTGGA ACTTCTTCGT
AAACGTGGTA TTCATTTGGC TGTTGTCATC GATGAATATG GTGGAACTGA CGGTATTGTT
ACGCTCGAGG ACATGACAGA AGAGCTAGTT GGAGATATTC GCGATGAATA TGATTTGCCT
GGTGAAACTG AGCAAAATAA TGTGAATAAA ACAACTGCTT TTGTAAATGG TGTTGCAAAA
ATTGATGGCG GTATGACCAT TGAAGATTTT GCTGACATTA CCGGCATTGA GCTTGAGGAC
GGTCCGTATG AGACTGTTGC AGGCTACTTT TTAGCGCATA CTGGCTCAAT GGGAAGTGTT
GGAGCTGTTT TGCATGATGC GGATGGTTAC GATATGACTG TAACTGCGGT TGATGGTAGG
CGTATTGCGA CGATTGAAGT GCGTCGCCGT GCGTAG
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| Protein sequence | MAIGFNILLI MIFLLFGSVF AATELALVSL RSSQIDRMEL QDARGARVAK IARDPNTFLS
ALQIGVTLSG FLSASFGESA LAPYVVPVVC SWGVSSHVAG PLTTIFLTLV ISYCSIVISE
LVPKRIAMQR AEQIARAVVP AVDVFSKICK PLIWLIGKNT NGFVRILGFD PNEKESEVSD
EELRVLVNSN KRLSQDERTI LDDVFDASET IVAEVMRPRA DVEFLDGSLS LEEAAAKIRE
LPYSRYPVIG KDFDDVIGFV HVRDLLDVRD PNAKTVADVT REGISLPGTS KLLPSLELLR
KRGIHLAVVI DEYGGTDGIV TLEDMTEELV GDIRDEYDLP GETEQNNVNK TTAFVNGVAK
IDGGMTIEDF ADITGIELED GPYETVAGYF LAHTGSMGSV GAVLHDADGY DMTVTAVDGR
RIATIEVRRR A
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