Gene HMPREF0424_0008 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0008 
Symbol 
ID8709130 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand
Start bp9218 
End bp10696 
Gene Length1479 bp 
Protein Length492 aa 
Translation table11 
GC content43% 
IMG OID646482131 
Productferredoxin/ferredoxin-NADP reductase family protein 
Protein accessionYP_003373281 
Protein GI283782527 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000479835 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAAAAAA ATAACTTAAA CGAAAATGTT TCACAAGAAA CATCTCAACT GCGTATTGCT 
GTAATAGGAA CAGGCCCTGC AGGAGTGTAC TCTTCCGATA TCTTCTTACG TCAGATTGCA
AAGCGTGGAG AAGAATTGGG ATTAGGCTCT AGCGCTCGCA TTGATCTTTT TGAAAAATTG
CCAGTGCCTT TCGGCTTAGT GCGTTACGGA GTAGCTCCTG ACCATCCAAG TATCAAATTT
ATTGCGGATG CGCTTGAAAA GACGCTTGAT AATCCAAATA TTCATCTTTA TGCAAATGTT
GAATTTGGTA AAGATATTGC ATTAGAAGAT TTACTTCATA GATATGATGC TGTGTTATTT
GCAACGGGTG CTGTGGAAGA TAGGCCTCTT CGAGGAGTTC CAGGTGCCGA TTTAGACGGA
GTGTACGGAG CTGCAAAATT CGTAGAATGG TACGATGGAT ACCCAACTAG CAATCGAGAA
TGGCCGCTTG AAGCCAAGGA AGTAGCTGTT ATTGGTGGCG GAAATGTGGC AATGGATGTT
GCTCGTGAGC TTTTACGAGA TCCTGATTAT TTGCGCGCTC ATACGGATAT TCCAGATGAC
GTGTATGAGG GATTGCAAAA AAATAAAACC CAAACCTTGC ATTTATTTAT TCGTCGTGGA
GTTGCCCAAG CAAAATTCTC TGTTCAAGAA TTGCGCGAAA TGGAAAAGTT ATCCGGAGTG
CAAATTGTTA TTAATGAGGA TGATTTTGAA CTTGACGATG AGACTATTGA AGTAGCCGGT
AACGATAAGC TCACGCGTCA AATGGTTGAG GAGCTTTTCG CTATTCGCGA TATGGCTGAA
GACATGGAAG ATGGCGGAAA CGTTGATTTT GAGGGGAAGC CAGCCAACAA ACGCTATATT
ATCCACTTCA ACTGTGCGCC GGTAGAAATT CTTGGTGAAG ATGGACATGT GAAAGCAATA
CGAGTTGAGC GCACGACTAC AAGCGCCGAT GGCAAAATGA CTCGTACTGG AGAGTTCGAG
GAATACGCCG TTCAAGCTGT ATACCATGCC ATTGGCTACC ATCCTGCAGA AGTTGCAGGT
ATTGCTTACG ACGAAAAGCG TACTTTGCTT GCAAATATTG ATGGGCGCTT AGTGGAGTCT
GTGGAAAATG GCGAAGTTCG TGAGCGATTG TATGCAACTG GCTGGGCTAA GCGTGGGCCG
GTAGGATTAA TCGGTTCTAC AAAATCTGAT GCTCTTTTGA TTGTTAATAA TATGCTTGAA
GATTTATCTA AAGCTGGCAA TGCTGGGCGA ATCGCACCTG ATCGCGATGA AAATTCTATA
GATAAATTAT TGGCAGAAAA GGGCATTAAA CCAATTGATT ACGCCGGTTG GAAGCGAGTT
GACTCTTATG AGCGTGAACT TGGAGCCAAT GAGCAGAGAA CTCGAAAGAA AGTTGTTTCA
GCTTCTGAAC TTGTAAATAT TGCTTTAGGT AGCAAATAA
 
Protein sequence
MEKNNLNENV SQETSQLRIA VIGTGPAGVY SSDIFLRQIA KRGEELGLGS SARIDLFEKL 
PVPFGLVRYG VAPDHPSIKF IADALEKTLD NPNIHLYANV EFGKDIALED LLHRYDAVLF
ATGAVEDRPL RGVPGADLDG VYGAAKFVEW YDGYPTSNRE WPLEAKEVAV IGGGNVAMDV
ARELLRDPDY LRAHTDIPDD VYEGLQKNKT QTLHLFIRRG VAQAKFSVQE LREMEKLSGV
QIVINEDDFE LDDETIEVAG NDKLTRQMVE ELFAIRDMAE DMEDGGNVDF EGKPANKRYI
IHFNCAPVEI LGEDGHVKAI RVERTTTSAD GKMTRTGEFE EYAVQAVYHA IGYHPAEVAG
IAYDEKRTLL ANIDGRLVES VENGEVRERL YATGWAKRGP VGLIGSTKSD ALLIVNNMLE
DLSKAGNAGR IAPDRDENSI DKLLAEKGIK PIDYAGWKRV DSYERELGAN EQRTRKKVVS
ASELVNIALG SK