Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0008 |
Symbol | |
ID | 8709130 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 9218 |
End bp | 10696 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646482131 |
Product | ferredoxin/ferredoxin-NADP reductase family protein |
Protein accession | YP_003373281 |
Protein GI | 283782527 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000479835 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAAAAAA ATAACTTAAA CGAAAATGTT TCACAAGAAA CATCTCAACT GCGTATTGCT GTAATAGGAA CAGGCCCTGC AGGAGTGTAC TCTTCCGATA TCTTCTTACG TCAGATTGCA AAGCGTGGAG AAGAATTGGG ATTAGGCTCT AGCGCTCGCA TTGATCTTTT TGAAAAATTG CCAGTGCCTT TCGGCTTAGT GCGTTACGGA GTAGCTCCTG ACCATCCAAG TATCAAATTT ATTGCGGATG CGCTTGAAAA GACGCTTGAT AATCCAAATA TTCATCTTTA TGCAAATGTT GAATTTGGTA AAGATATTGC ATTAGAAGAT TTACTTCATA GATATGATGC TGTGTTATTT GCAACGGGTG CTGTGGAAGA TAGGCCTCTT CGAGGAGTTC CAGGTGCCGA TTTAGACGGA GTGTACGGAG CTGCAAAATT CGTAGAATGG TACGATGGAT ACCCAACTAG CAATCGAGAA TGGCCGCTTG AAGCCAAGGA AGTAGCTGTT ATTGGTGGCG GAAATGTGGC AATGGATGTT GCTCGTGAGC TTTTACGAGA TCCTGATTAT TTGCGCGCTC ATACGGATAT TCCAGATGAC GTGTATGAGG GATTGCAAAA AAATAAAACC CAAACCTTGC ATTTATTTAT TCGTCGTGGA GTTGCCCAAG CAAAATTCTC TGTTCAAGAA TTGCGCGAAA TGGAAAAGTT ATCCGGAGTG CAAATTGTTA TTAATGAGGA TGATTTTGAA CTTGACGATG AGACTATTGA AGTAGCCGGT AACGATAAGC TCACGCGTCA AATGGTTGAG GAGCTTTTCG CTATTCGCGA TATGGCTGAA GACATGGAAG ATGGCGGAAA CGTTGATTTT GAGGGGAAGC CAGCCAACAA ACGCTATATT ATCCACTTCA ACTGTGCGCC GGTAGAAATT CTTGGTGAAG ATGGACATGT GAAAGCAATA CGAGTTGAGC GCACGACTAC AAGCGCCGAT GGCAAAATGA CTCGTACTGG AGAGTTCGAG GAATACGCCG TTCAAGCTGT ATACCATGCC ATTGGCTACC ATCCTGCAGA AGTTGCAGGT ATTGCTTACG ACGAAAAGCG TACTTTGCTT GCAAATATTG ATGGGCGCTT AGTGGAGTCT GTGGAAAATG GCGAAGTTCG TGAGCGATTG TATGCAACTG GCTGGGCTAA GCGTGGGCCG GTAGGATTAA TCGGTTCTAC AAAATCTGAT GCTCTTTTGA TTGTTAATAA TATGCTTGAA GATTTATCTA AAGCTGGCAA TGCTGGGCGA ATCGCACCTG ATCGCGATGA AAATTCTATA GATAAATTAT TGGCAGAAAA GGGCATTAAA CCAATTGATT ACGCCGGTTG GAAGCGAGTT GACTCTTATG AGCGTGAACT TGGAGCCAAT GAGCAGAGAA CTCGAAAGAA AGTTGTTTCA GCTTCTGAAC TTGTAAATAT TGCTTTAGGT AGCAAATAA
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Protein sequence | MEKNNLNENV SQETSQLRIA VIGTGPAGVY SSDIFLRQIA KRGEELGLGS SARIDLFEKL PVPFGLVRYG VAPDHPSIKF IADALEKTLD NPNIHLYANV EFGKDIALED LLHRYDAVLF ATGAVEDRPL RGVPGADLDG VYGAAKFVEW YDGYPTSNRE WPLEAKEVAV IGGGNVAMDV ARELLRDPDY LRAHTDIPDD VYEGLQKNKT QTLHLFIRRG VAQAKFSVQE LREMEKLSGV QIVINEDDFE LDDETIEVAG NDKLTRQMVE ELFAIRDMAE DMEDGGNVDF EGKPANKRYI IHFNCAPVEI LGEDGHVKAI RVERTTTSAD GKMTRTGEFE EYAVQAVYHA IGYHPAEVAG IAYDEKRTLL ANIDGRLVES VENGEVRERL YATGWAKRGP VGLIGSTKSD ALLIVNNMLE DLSKAGNAGR IAPDRDENSI DKLLAEKGIK PIDYAGWKRV DSYERELGAN EQRTRKKVVS ASELVNIALG SK
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