| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0005 |
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| Symbol | |
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| ID | 8709593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 5200 |
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| End bp | 7962 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482128 |
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| Product | LPXTG-motif cell wall anchor domain protein |
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| Protein accession | YP_003373279 |
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| Protein GI | 283782525 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | [TIGR02331] Rib/alpha/Esp surface antigen repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000417696 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAGAAAAG TAAGTACCGT TCACACAATT AGTGGAATTG TATTAACTTT TGGTTTGATC
ATTTCATCGC TGGTTTACAT ACCTTCGCTA GCAACAACCG CAGCGGCAGA AGAAACATCA
CCAGTGCACG TACCTCTTAC CGCACAAACC GCTCACGACA TTTCTACTGG TCGAATTCGT
TTGGAAAATA ATCAGATTGA TTCTTTGCTT TACCATAAAG CCGCGCTAGA TCCAGATCAA
GATAGCGACG GCGACGGTCT GAAGAACAGC GAAGAGCTTT ACACTTACGT AAAAAACGGA
CGCACATATT ACGGATATAA TTCGCATCCA CTTATTAAGG ACACCGACGG CGACGGATTA
GATGACAAAA ACGATAGCAA TCCTCGCAGG TGGGATATTA GCCCTCGCGA TATGGCGCTT
TTTATGGAGC TTGTGTATAG GGAAGACAGC TACGTCAAAG AAGTACTTGA CTACTCAAAA
CCGCTCAGGA TTATTTATGA AAATCGCAAT GAGTACCGCC TTATGCACAA CGAGCTTGCA
CCATTCTGGA AAGTTAAGGA AACCTACCAC TTCGGGAGTG GGTTTGACGC TATCCTTTTT
GAAAATGTGA ATCCTGCGTA CCCATTTATT AAGCAAAACG GCGTGCAAGT ATTAGCAATT
CGCGGCACTA AAGGCGCAAC AGATGTATGG AATGATGTCT TGCTTGGAAC TGGCTCAAAC
CCAGGCCAAG CTGCTGATAT AGATAAATTA ATTGATGAAT ATAAACAAAA GAACACTGTA
AGCAATTTAT ATGTTACAGG TCACTCTTTA GGTGGGTACT TAGCACAAAG AGCCTTAATT
CGAGCTAAAA GTAGTGGCGC AACTTTTAAT ATTAAAGCTT ATACTTTTAA CGCTCCGAGA
ATCAAAGGTA ATATATTCAA CAGATGGCTT TGGGAAACAT CTGATTTTGG CGATAAACTA
ACTAAAGAAG GTTATGCCGT TCATTATAAA GTTGATAACG ATACAGTAAT AGGCGGAATA
GGAAATTTCG AAGGTGCAAT AAGCGTAGGA AGTTCTGGAG CCGGTCATGG ATCCAGAAGC
TACTTTGAGC CTAGAATGAA TGCTTTCCAA GGATTCACAG TTGGCGAACG CAATAAAATT
GAGGGAACCG GTCGCAAAAT TGATGCACTC GACGGATTAG TTAACGAACC AGTTATTAAA
ACTGACGAAC AAGCTTTCGA ACCTAAAATT ACGAATATTG ACATTATGGA AAATGATCCA
TTGCCAAAAG GCACAACAAT AAAGCATCTT CTTAATCCTA ACGATATACC GCAAGGCTCT
ACCATTACAG ACATTACAGA ATACGACAAA ATTGACACTT CTCAATGCGG CAACTACGAA
GGGAAAATAC TACTCGTACT ATCTGGTAGA ATATTAAAAA CTATTATAGT TCCAATAACC
ATTCATAAAC GATTGGCTAA TATCGAGGAA CTTCCAAATG TTACTGCTGA ACCTGGCAAG
AAAATAGAAG TCAAAAAAGA CAATAAAATC CCCGATAATT TCGACTTCAA ACCATACTTA
AAAAACTTAC CAGAAAACAG CACAGTACAA GTTGTAAAAC AACCAAACAC AACAAACACT
GGAGAAACAA CATTTATCAT AGAAATAACC TTTGCAAACA AAGCAAAACA GAAAGTAACT
CTTAAAGCTC ACGTTGTAGA AATCATTCCA GCAACACCAC TAAACCCAGC TAAAAAGAGT
ATTACGTGGG CCGAGTTAAT TCCTGCAAAG AAATCAACAC CATGGATCGA GCTAACACCA
GCGACACCAG CTCCAACACC AACTCCCGTA CCTCCGACAC CTGTTCCACC GACACCGGAA
CCAACGCCTT CGCCTTCGCC TACGCCGACA CCGACGCCTG ATCAACAACC TGCAGTGCCT
CTGCAGCCGA AACCAAACCC GGTGAATCCA ACACCCGTTC CGCCAAAACC TGCGCCTAAA
CCAGAGTCAC AACCTGTTCC ACCAACACCA GAATCTCATT CTGACAACAG TGAACACTCT
AGCAATGGCG AACCTGATAA GTCTGCAAAT AGCACAACCC CACAGACTAA TAAGTTCGAT
CAAGACCATA AGGAAATTCC AAGCATGGGA TTTCCCGAAC CAACACATCC TTCCAAAACT
CTACAAACTC CTGCAGTTAG TAACGATTCT ATGCGCGAAA ACCACATAGA GCTTAACGCA
AACTCAGAAT CACACACATT ACAGCAACAG ATTCCATCAG CACCAAAGAG TATTGCAGAT
TTACTTCCAG CGTTGTGCAA CACTCTCACC GTCGGGAATA ATAACATTGC TTATGCGGGA
AAAAATAACC ATATCACTGT TACAGTAAAT GCAACATCAG AATTCATGCG CAGATTACAA
CTAGAAAAAG CAGTAAAAGC TTATGCCTAC ATATATTCCA ACCCTAAACT TCTTTATAGC
GCAAATGGAA TGAAATATGT AACAGTTCAC ATTAATGAAT ATGGCAGAAT TGTATTCGAC
GTAGTTATCC CAGAAGAATA TAAAGGCAAT CATACGATTG TCCTTATTGA CGAAAACGGT
AAACAAGTTG CGTGGACGAA TACTTTAGTA AAGAAAGACC CTCATTTACA CAAACAATCC
ACAATAGCCA ATAATGCACT CCCTCGTACT GGAATACAAA TAATTCCAAT TGTACTTAGC
GTTGCATTAA TGCTGTTTGT TAGCACAATT GTGACAATTG CAAGAAAAAG AAAGTTTAAC
TAA
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| Protein sequence | MRKVSTVHTI SGIVLTFGLI ISSLVYIPSL ATTAAAEETS PVHVPLTAQT AHDISTGRIR
LENNQIDSLL YHKAALDPDQ DSDGDGLKNS EELYTYVKNG RTYYGYNSHP LIKDTDGDGL
DDKNDSNPRR WDISPRDMAL FMELVYREDS YVKEVLDYSK PLRIIYENRN EYRLMHNELA
PFWKVKETYH FGSGFDAILF ENVNPAYPFI KQNGVQVLAI RGTKGATDVW NDVLLGTGSN
PGQAADIDKL IDEYKQKNTV SNLYVTGHSL GGYLAQRALI RAKSSGATFN IKAYTFNAPR
IKGNIFNRWL WETSDFGDKL TKEGYAVHYK VDNDTVIGGI GNFEGAISVG SSGAGHGSRS
YFEPRMNAFQ GFTVGERNKI EGTGRKIDAL DGLVNEPVIK TDEQAFEPKI TNIDIMENDP
LPKGTTIKHL LNPNDIPQGS TITDITEYDK IDTSQCGNYE GKILLVLSGR ILKTIIVPIT
IHKRLANIEE LPNVTAEPGK KIEVKKDNKI PDNFDFKPYL KNLPENSTVQ VVKQPNTTNT
GETTFIIEIT FANKAKQKVT LKAHVVEIIP ATPLNPAKKS ITWAELIPAK KSTPWIELTP
ATPAPTPTPV PPTPVPPTPE PTPSPSPTPT PTPDQQPAVP LQPKPNPVNP TPVPPKPAPK
PESQPVPPTP ESHSDNSEHS SNGEPDKSAN STTPQTNKFD QDHKEIPSMG FPEPTHPSKT
LQTPAVSNDS MRENHIELNA NSESHTLQQQ IPSAPKSIAD LLPALCNTLT VGNNNIAYAG
KNNHITVTVN ATSEFMRRLQ LEKAVKAYAY IYSNPKLLYS ANGMKYVTVH INEYGRIVFD
VVIPEEYKGN HTIVLIDENG KQVAWTNTLV KKDPHLHKQS TIANNALPRT GIQIIPIVLS
VALMLFVSTI VTIARKRKFN
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