| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0002 |
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| Symbol | ahpF |
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| ID | 8709300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 956 |
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| End bp | 2629 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646482125 |
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| Product | alkyl hydroperoxide reductase, F subunit |
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| Protein accession | YP_003373276 |
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| Protein GI | 283782522 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
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| TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000148365 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTTTGT TGAATGCATC ATTAACTGCT CAGCTTTCAG AATTACTAAA AAAGATGGTA
TCTAAAATAG AAATCATTTC TTACGTTGAT AATTCTGAAA CATCTCAAAA AGTTAAATCC
TTACTGGAAG AAGTATCTCA GCAAAGTGAC AAAATCAGTA TTTCTGAAGT AAATAATAAT
GAAATTAGCA ATGTAAAGCG TAAACCAAGC TTTGAATTGC GTAGAAAACT AGATAATCCA
GTAAATGGAG AATCTACTGT ATCGGTTAGT TTTGCGGGAT TGCCTTTAGG GCACGAATTC
AGCTCTTTAG TACTAGCACT TCTACAAGTA AGCGGCTATG CGCCAAAAAT TAGTGATGAG
CAACGCGATG CAATACTAAA GCTTGGTTCA CACAATGTGA CAACATACAT GTCGGTAACT
TGCCTGAATT GCCCAGAAGT TGTGCAATCG CTTAATACCA TTTCTGTTAT TAACCCTAAA
ATTCAGCATA CTGTAGTTGA AGGTAGCGCT TTCCGTGAAG AAGTAGATAA ACTCGGTGTA
ATGAGCGTGC CAGCAGTTTT TGAAAATGGC AAACTTGTTT CCTCCGGACG GGCAGGAATT
GACGAACTTG TATCTGTGCT TGCATCACAA GAAAAATCTG TTGAGCAAAA TGAGAATGGC
AATAATGGTA ATAGCGTTTC TTCGGCAAAT GTTGCGCTCG CAGAAAAAAT GAATTCGCAA
AATCCATACG ATATTGTTAT TGCTGGCGGC GGTCCTGCTG CTTCTGCTGC CGCAATTTAC
ACTGCTCGTA AGGGTTTGCG TACGGCTATG ATTATGGATC ATCGTGGCGG ACAGGTTGTA
GAAACTGAAA GTATTGAAAA TCATATTTCC CAAACGCATA CGACTGGTTC TCAACTAGCA
GCAGATTTAA CTAAGCATAT TTCTCAATAC GATATTGACG TATTTACTCC TGATTGGGCA
GACTCGCTCG ATTTATCTAA GGAACCATAT GGGTTACATA CTATTCATGC GCGTTCTGGC
GGATCTTTGA AAGCGCGTGC AGTGATTATT GCAACTGGCG CGACTTGGCG TACGTTGGGC
GTTCCTGGAG AAGATGAGTA TAGGAATAGA GGCGTATCAT TCTGCCCTCA TTGCGACGGC
CCACTTTTCA AAGATAAGAA TGTTGTCGTT GTTGGCGGCG GAAATTCTGG TGTTGAAGCT
GCTATTGATT TAGCAGGAGT TGCAAAACAT GTGACGGTGG TTGAGTTCAT GGATGTGCTT
AAAGCTGATC AAGTATTGCT TAATACTTTG CATAAATTAC CTAACGCTGA AGTTATTACG
AGTGCTGCCG TAAGTAGTAT TGAAGGTAAT GGTAGTAAAG TTACTGCAAT ACGTTACATA
GATCGCAATA AAGCAGACGA TGATGAAAAC AGAGAACATA TTGTTGAAAC CGATGGGGTT
TTTGTGCAAA TTGGTTTAGC TCCGAATACT CGTTGGCTTG TAAATAATAT TTCTCTCAAT
AATCGAGGAG AAATTATTAC GAATCGCGCT GGATGCACTG ATACTCCGGG TGTTTTTGCT
GCTGGAGATT GTTCAGACGA ACCGTATAAG CAGATTGTTA CAGCGTATGG TTCTGGAGCC
AATGCTGCGT TATCTGCATT TGACTATCTT ATCCGCAGCC CGCAAAATAA ATAA
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| Protein sequence | MSLLNASLTA QLSELLKKMV SKIEIISYVD NSETSQKVKS LLEEVSQQSD KISISEVNNN
EISNVKRKPS FELRRKLDNP VNGESTVSVS FAGLPLGHEF SSLVLALLQV SGYAPKISDE
QRDAILKLGS HNVTTYMSVT CLNCPEVVQS LNTISVINPK IQHTVVEGSA FREEVDKLGV
MSVPAVFENG KLVSSGRAGI DELVSVLASQ EKSVEQNENG NNGNSVSSAN VALAEKMNSQ
NPYDIVIAGG GPAASAAAIY TARKGLRTAM IMDHRGGQVV ETESIENHIS QTHTTGSQLA
ADLTKHISQY DIDVFTPDWA DSLDLSKEPY GLHTIHARSG GSLKARAVII ATGATWRTLG
VPGEDEYRNR GVSFCPHCDG PLFKDKNVVV VGGGNSGVEA AIDLAGVAKH VTVVEFMDVL
KADQVLLNTL HKLPNAEVIT SAAVSSIEGN GSKVTAIRYI DRNKADDDEN REHIVETDGV
FVQIGLAPNT RWLVNNISLN NRGEIITNRA GCTDTPGVFA AGDCSDEPYK QIVTAYGSGA
NAALSAFDYL IRSPQNK
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