| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0001 |
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| Symbol | lysR |
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| ID | 8710080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 12 |
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| End bp | 914 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646482124 |
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| Product | LysR substrate binding domain protein |
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| Protein accession | YP_003373275 |
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| Protein GI | 283782521 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000100891 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATATTA GAGCGTTAGA ATATCTAATA GCTTTTGCAC AAGAAGGAAG CTTTACCAAG
GCGGCTGTTC GTATGCGCGT CTCTCAGCCT ACTCTTTCAA CGCAAATTAA AAAACTTGAA
GAGACTTTAG ACGTAGAACT TATTGAGCGC ACTCCCGGGA AACAAATCTT AACTCCTGCT
GGGAGGGAAG TGGTTTATTA CGCTAAACGT ATTCAGGCAG ATATGTCACG TATTCGACAA
GCTGCAAGAC GCTCAGAAGA TCCATGGTCA TCTACAGTAG TTTTGGGTGT GTTCCCAACG
TTAGGACCAT ACTTACTTCC AAGAATTATG CCTGCACTCA GGCGTTTAAA ACCAAAACTT
ACTATTCGTT TTATAGAAGA AAAATCAGCG AAACTTATTG ATTTGCTAGA TAGTGGTCAA
GTCGACGCAG TTATATTAAG CGAAAGTTTG AATGCGCCTT CAATAAAAGT GTGTCATGTT
TTTGACGAAG ATTTTCTTCT TGCGACTTCT ACAAATTCTT TGCTAGGACA CGAGAGTAAA
CCAATTGAAC TTTCAGATTT GTCTACTCAG AAAGTGCTTT TACTAGAAGA TGGGCATTGT
ATGCGTAGAA GCATGCTCGA TGTATGCCAA AAAGTGGGGG CGAAACAATC AGAATTTAGG
GCAACGTCGT TAGAAACTTT GCGATATATG GTTGTAGGTA GCAAAGATGT GACATTATTG
CCGCGTCTTG CAACTGTACC TCCAATTGTG CAACCAGTTG GTTTGATGTT GCGTGAGTTT
AAGAATCCTA AACCTTATCG ATCGTTATAT TTGAATTGGC GCGCAGCTTC TCCAGTAGAC
AAAATTATGG AAGGATTGTG CACAATAATT AGTTCAGCAT GCTCTGATTT GCATAAAAAA
TAA
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| Protein sequence | MNIRALEYLI AFAQEGSFTK AAVRMRVSQP TLSTQIKKLE ETLDVELIER TPGKQILTPA
GREVVYYAKR IQADMSRIRQ AARRSEDPWS STVVLGVFPT LGPYLLPRIM PALRRLKPKL
TIRFIEEKSA KLIDLLDSGQ VDAVILSESL NAPSIKVCHV FDEDFLLATS TNSLLGHESK
PIELSDLSTQ KVLLLEDGHC MRRSMLDVCQ KVGAKQSEFR ATSLETLRYM VVGSKDVTLL
PRLATVPPIV QPVGLMLREF KNPKPYRSLY LNWRAASPVD KIMEGLCTII SSACSDLHKK
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