Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sros_8653 |
Symbol | |
ID | 8671990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Streptosporangium roseum DSM 43021 |
Kingdom | Bacteria |
Replicon accession | NC_013595 |
Strand | - |
Start bp | 9547254 |
End bp | 9549254 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | |
Product | Arabinose efflux permease-like protein |
Protein accession | YP_003344038 |
Protein GI | 271969842 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATGCCC ACCAGTCCGG GCGGCAAGCG CGGCGCACAG GAGGCTTGGG GCTCGTCATC GGCGCGCTCA TGCTCGGCAT GCTGCTCGCC GCGCTGGACC AGACGATCGT CTCGACCGCG CTGCCGACGA TCGTCAGTGA CCTGGGCGGC CTGGGGGAGC TGTCCTGGGT GGTCACCGCC TACATCCTGT CCTCGACGGT CTCGACGCCC CTGTGGGGCA AGCTGGGTGA CCAGTACGGC AGGAAGAGCC TGTTCCAGGC CGCGATCGTC GTCTTCCTGG CGGGCTCGGC GCTGTGCGGC CTGTCGCGGA ACATGGGAGA GCTCATCGGC TTCCGCGCCC TGCAAGGGCT GGGCGGAGGC GGCCTCATGG TGCTCGCCCA GGCGATCGTC GGGGACGTCG TGCCGGTCCG GGAACGGGGG AGATACCAGG GGTTCTTCGG CGCGGTGTTC GCGGTCTCCA GCGTCGCGGG GCCGCTGCTC GGCGGTCTCT TCGTCGACCA CCTGTCCTGG CACTGGGTCT TCTACGTCAA CCTGCCGATC GGCGTCCTCG CGCTGATCGT GATCTCCTCG GTGCTGCCGT CCGGCACGGA GCGGACACGG CACACCATCG ACTACCTCGG CATGGTCTTC CTCGGCGGCG GGGCCGCCTG CCTGGTCCTG ATGGCCACCT GGGGCGGGAC CGCCTATCCC TGGGGCGACC CGGTCGTCGT CGGGCTGGGA GTCGCCGCGG CGGCGCTGCT GGCGCTCTGG TGGCAGGCGG AGAAGCGGGC GGCGGAACCG GTGCTGCCGC CGCGCCTGTT CAGGATGAGG GTCTTCAACG TGGCCTCGCT GATCGGCTTC GTCGTGGGGT TCGCGATGTT CGGCCCGCTC ACCTACATGC CGCTGTTCCT GCAGGTCGTC CAGGGCGTCT CGCCCACCGC GTCCGGGATC CACCTGCTGC CGATGATGGG CGGCATGCTG GTGACCTCGA TCGTCAGCGG GCAGATCATC ACGCGCAGCG GGAGATACAA GGTCTTCCCG ATCCTCGGCA CCGCGATCGT GTCACTCGGG CTCTACCTGC TCTCCCACGT CCACGAGGAC ATCTCCACCC TCCGGCTCAG CGTCTACCTG CTCGTGCTGG GCGTGGGCAT CGGCCTGGTG ATGCAGGTGC TGGTGATCGT GGTGCAGAAC GCCGTCGGGT TCGAGGACCT CGGGGTGGCC ACCTCGGGGG CGACCTTCTT CCGCCTGATC GGCGGCTCGT TCGGTGTCGC GATCGCCGGA TCGATCTTCA CCTCGCGGCT CACCGACGAC CTGGTACGGC TCTCGCGGAC GGTGAGCATC CCGCCGGGGA TGGAGAGGAC GGTCCAGTCG GACCCGACGG CCGTCCGGAG GCTGCCGCCG GAGACCGCCG CGGCGTTCCT CGCGGCCTAC TCCGACGCGA TCGCCCACGT GTTCCTCTTC AGCGCGCCGG TGGCACTGGT CGCCTTCGCC GCGGCCTGGC TGCTGCCCGA GCTGCCCCTG CGGGAAACCA CCAAGGCGGC CGACCTGGGC GAATGCTACG GCGCCGCGCC CACCGAGCGC TCCTCGCTCG CCGAGGTGGA ACGGGGGCTG TGGCGGCTGG CCGACGCGGA CATGCGCAGG GACTACTACC GCCGCCTGGG CGACATGGCC AACCTGGATC TGCCGCCGGG CGCCGTGTGG CTGCTCGCGC GCCTGGGCAC CCGGGGCCCC CAGGCGGGCG CGGAGCTCGC CGAGCGGGCG GGGGTGACGG TCGAAAGAGG CCGGCCGTAC GCGGACCTGC TCGTCGCGCG TGGCCTGGTC CGCCGGGCCG GCGACGGGGT CCTGGGGCTG ACCCCGGCCG GAGAGCAGGT GGCCGACCGG CTGGTCACGG AGGCCCGTGA GGGTCTCGGG CGGCTGATCC GGGACTGGAA CCCCGAGGAG CATCCCCGGC TCCGCGAGCT GCTGGACCGG CTCCCCCACG AGCTGCTCGG CTCGGCGGGC GATCGCCCGC GGAACGGCTG A
|
Protein sequence | MDAHQSGRQA RRTGGLGLVI GALMLGMLLA ALDQTIVSTA LPTIVSDLGG LGELSWVVTA YILSSTVSTP LWGKLGDQYG RKSLFQAAIV VFLAGSALCG LSRNMGELIG FRALQGLGGG GLMVLAQAIV GDVVPVRERG RYQGFFGAVF AVSSVAGPLL GGLFVDHLSW HWVFYVNLPI GVLALIVISS VLPSGTERTR HTIDYLGMVF LGGGAACLVL MATWGGTAYP WGDPVVVGLG VAAAALLALW WQAEKRAAEP VLPPRLFRMR VFNVASLIGF VVGFAMFGPL TYMPLFLQVV QGVSPTASGI HLLPMMGGML VTSIVSGQII TRSGRYKVFP ILGTAIVSLG LYLLSHVHED ISTLRLSVYL LVLGVGIGLV MQVLVIVVQN AVGFEDLGVA TSGATFFRLI GGSFGVAIAG SIFTSRLTDD LVRLSRTVSI PPGMERTVQS DPTAVRRLPP ETAAAFLAAY SDAIAHVFLF SAPVALVAFA AAWLLPELPL RETTKAADLG ECYGAAPTER SSLAEVERGL WRLADADMRR DYYRRLGDMA NLDLPPGAVW LLARLGTRGP QAGAELAERA GVTVERGRPY ADLLVARGLV RRAGDGVLGL TPAGEQVADR LVTEAREGLG RLIRDWNPEE HPRLRELLDR LPHELLGSAG DRPRNG
|
| |