| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sros_3472 |
|---|
| Symbol | |
|---|
| ID | 8666760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptosporangium roseum DSM 43021 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013595 |
|---|
| Strand | - |
|---|
| Start bp | 3840387 |
|---|
| End bp | 3842081 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | |
|---|
| Product | lipid ABC transporter ATPase/inner membrane protein |
|---|
| Protein accession | YP_003339151 |
|---|
| Protein GI | 271964955 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00244165 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00122928 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGGCGTGT CAGGACCGTC GGGACGGAAC GTTCTGGGGC GCGCGATCCG AGGACAGCGG
CGCGACGTCG CCCTCGGATC CTTCCTGGGA GCCGGGCACC AGGCCGGGGA GGCGCTGGTG
CCGGTCCTGA TCGGCCTCGT GATCGACCAG GCCGTCGCCG CGTCCGACAC GGGCGCGCTG
CTGCGCTGGC TCGCGGTCCT CGCCGTGGTC TACGTGGGGC TGTCGTTCAG CTTCCGCTTC
GGCGCCCGCG CCGGGGAACG GGCCGCCGAG CAGGCCGGTC ACGCGCTACG CCTGGAGCTG
GTGCGCCGCG TGCTGGACCC CCGCGGCGGG GCCGAGAACG GCCGGCTGCC CGGCGCCCTG
ACCATCATCG CGACCGAGGA CGCCAAGCGT GTCGGCGCCG TGAACATGGC GCTGATGTCG
GGGATGTCGG CGCTCGCGGG ACTCCTGGTC GGCGCCGTGG TGCTGCTGCG GATCTCGGTG
CCGCTCGGCC TGATCGTGCT GCTGGGAACG CCGGTGCTGC TCTGGCTCGG CCACCTGCTG
AGCAAGCCGC TGGAGCGGCG CAGCGAGGCC GAGCAGGAGC GGGCCGCGCA CGCGTCGGGC
GTCGCCGCCG ACCTGATAAC GGGGCTGCGG GTGCTCAAGG GCATCGGCGC GGAGTCCGCG
GCGGTCGCCC GCTACCGGCA CACCAGCCGC GCGTCCCTGA CGGCCACGCT GCGCGCGGCG
CGCGCGGAAT CCTGGCAGAG CGGCATGGTC CTCGCCCTGA CCGGCGGCTT CATCGCCGTC
GTCGCGCTGG TCGGCGGGCG GCTCGCCGCC CAGGGCGACA TCAGCCTGGG CCAGCTCGTC
TCGGCGGTCG GGCTCGCGCT GTTCCTGCTC GGACCGCTGG AGGTGTTCTC CTGGGTGAAC
GCCGAGCTCG CCCAGGGCCG GGCGTCGGCG GCGCGCATCG CCGGGGTCCT GGCGGCGCCG
CCGGCCGTGA CGGGCGGCGA CCTGCCGCTG CCCCGACCGG TGCGGGGCGA GGTACGGCTG
CGCGGCGTCA GCCACGGCGG GCTGCGCGAG GTCGACCTTG ACGTCGCGCC CGGCGAGATG
CTCGGCGTGG CCGCGACGGA CCCGGCGGAC GCGGCGGCCC TGCTGCGCTG CCTGAGCCGG
CAGGCCGACC CCGACACCGG GGTCGTGGAG CTGGACGGCG TGACGATGTG CGACCTGGAC
CCGGCCGACC TCCGCATGGC GGTGCTGGTG GCCGAGCACG ACGCGGACCT GTTCGAAGGC
ACCCTGCACG GCAACGTCGG CGCCGCCGCC CCCGGATCGG CCGATCCGGC GCGGGCGATG
GCGGCGGCCG GGGCCGACGA GATCGCCCGG ACGCTGCCGG AGGGCGGCGA CACGGCGGTG
AGCGAGCGCG GACGCTCGCT GTCCGGCGGG CAGCGCCAGC GCGTGGCCCT CGCCCGGGCC
CTGGCCGCCG ACCGGCCCGT GCTGGTGGTC CACGACCCGA CCACCGCGGT CGACGCGGTC
ACCGAGTCCC GTATCGCCGC CGGCCTCCGC GAGATCCGCC GGGGCCGCAC GACGATCCTG
GTCACCACCA GCCCCGCGCT GCTCGCGGTC GCCGACCGGG TGGTCCTGCT CGACGACGGC
CGGGTCGTCG ACGAGGCCCC GCACGCCGAA CTGGTACGGC GCCACGCCGC CTACCGGACG
GCGGTGCTGA CATGA
|
|---|
| Protein sequence | MGVSGPSGRN VLGRAIRGQR RDVALGSFLG AGHQAGEALV PVLIGLVIDQ AVAASDTGAL
LRWLAVLAVV YVGLSFSFRF GARAGERAAE QAGHALRLEL VRRVLDPRGG AENGRLPGAL
TIIATEDAKR VGAVNMALMS GMSALAGLLV GAVVLLRISV PLGLIVLLGT PVLLWLGHLL
SKPLERRSEA EQERAAHASG VAADLITGLR VLKGIGAESA AVARYRHTSR ASLTATLRAA
RAESWQSGMV LALTGGFIAV VALVGGRLAA QGDISLGQLV SAVGLALFLL GPLEVFSWVN
AELAQGRASA ARIAGVLAAP PAVTGGDLPL PRPVRGEVRL RGVSHGGLRE VDLDVAPGEM
LGVAATDPAD AAALLRCLSR QADPDTGVVE LDGVTMCDLD PADLRMAVLV AEHDADLFEG
TLHGNVGAAA PGSADPARAM AAAGADEIAR TLPEGGDTAV SERGRSLSGG QRQRVALARA
LAADRPVLVV HDPTTAVDAV TESRIAAGLR EIRRGRTTIL VTTSPALLAV ADRVVLLDDG
RVVDEAPHAE LVRRHAAYRT AVLT
|
|---|
| |