Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_56 |
Symbol | clpC |
ID | 8657010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | + |
Start bp | 50378 |
End bp | 52852 |
Gene Length | 2475 bp |
Protein Length | 824 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | |
Product | ATP-dependent Clp protease, ATP-binding subunit |
Protein accession | YP_003329558 |
Protein GI | 270307500 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTAGTA GATTTGATAA ATTTTCTGAA AGAGCGCGCC GGGTTCTTAC CTATGCACAG GAAGAGGCCC AGAACCTTAA CCATAACTAT ATCGGTACCG AGCATATTCT GCTGGGGCTG GTAAGGGAAG AAGAAGGCGT GGCTGCTCGA GTACTGGTCA ACATGGAAGT AAATTTGGCC AAAGTACGTT CTGCCGTTGA ATTTATACTT GGGCGGGGCG AACACCCGGC TACCTCTGAA ACCGGTCTTA CCTCCAGAGC CAAAAAGGTA ATAGAACTGG GTATTGATGA AGCCAGAAAC TTGGGGCACA ACTATATCGG CACTGAGCAC CTGCTTTTAG GTTTACTGCG CGAAGGTGAA GGAGCAGCAG CCGGTGTGCT TGAGAGTTTC GGGGTTACTG TTGAAAAGGT ACGCACCGAA GTGGGGCGTA TTTTAAATCA GGGCTTAAAT AAACCTAAAA CCAGCCGTAC AACTCCCAGC CGGACCCCCC AGCTTGACCA GCTGGGCTTT GACCTTACGG CTGCTGCCAG AACCGGCAAG CTTGACCCGG TTATCGGTCG TGCCAAAGAA ATAGAGCGGG TCGTTCAGAT TCTTTCCCGC CGCACTAAAA ATAACCCTGC CCTTATCGGC GAACCCGGTG TCGGCAAAAC CTCCATTGTA GAGGGGCTGG CCCAGCGGAT TGTTTCGGGT GATGTTCCGG AAACTTTGGA GCAGAAACAT ATAATCTCGC TGGACGTGGC CTCACTGGTA GCCGGTACTA AATACCGGGG TGAATTTGAG GAACGGCTCA AGAAAGTTAT TGAAGAAATT AAAAACGCAG GCAATATAAT CCTGTTTATA GACGAATTTC ATACCATGGT GGGTGCCGGT GCCGCCGAGG GTGCGGTAGA TGCCGCTAAT ATCCTCAAGC CTTCGCTGGC CAGAGGCGAG GTACAGGTAA TAGGGGCAAC TACCCTGGAT GACTTTCGCA AATATGTTGA GCGGGATGCC GCACTTGAGC GGCGTTTCCA GCCGGTGCTG GTGGAAGAAC CGGCCATAGA AGATACCCTG AATATTCTTC GCGGCATAAA AGAGCGCTAC GAAGAGCATC ATAAGCTTAT CATCAGCGAA GAAGCTATTG CCGCTGCCGC CAATATGGCT GCCAGATATA TACCTGACCG CTTTTTGCCG GACAAGGCTA TAGATTTAGT TGATGAGGCC GCTTCACGGG TGCGGATAAA GAAACGCACC AAGCCGGTCT CTTTGAAAGA GATGAAAGCC ATAGAAGACA GCTACCGCCG GGATAAAGAA GCCGCTTTGG CAACCCAGCA GTATGACTAT GCTTCCGAAT TGCGTGAGCG TGAGCTTCAG ATAGCTGAAA AGATACGCCG CATGGAAGAC GAATGGCAGA ACGAACAGGC TATGGACAAG CCGGTAGTGG GCGAAGAAGA TATTGCCCAG GTAGTCAGCA TGTGGACGGG TGTGCCGCTG GTACAGCTTA CCGGTGACGA AACCGAACGT CTTTTACATA TGGAAGAAGC CCTGCATGAG CGGATTATCG GCCAGGAAGA AGCTATTGTT ACCATATCCA AGGCTGTCAG ACGGGCACGG GCCGGTCTTA AAGACCCCCG CCACCCCATC GGCAATTTTG TTTTCCTCGG GCCTACCGGC GTGGGTAAAA CCGAGCTGGC ACGGGCGCTT GCCCAGTTTA TGTTTGGTTC GGAAGATGCT TTGGTTCGGC TGGATATGTC CGAATTTATG GAAAAATTTG CCGTATCCCG TCTGGTGGGT GCGCCTCCCG GATATGTGGG TTATGATGAG GGCGGTCAGC TGACTGAAGC CGTTCGCCGC AAGTCGTACT GCCTGATACT GTTGGACGAA ATAGAAAAAG CTCATCCTGA TGTTTTCAAC ATACTTCTGC AGATATTTGA TGACGGCCAC CTGACAGATG CCAAGGGCAG AAGGGTGGAT TTCAGGAATA CCATTATTAT CATGACCTCA AACATTGGGG CTGAGCTTAT CCGCAAGGGC AGCGGGACTA TCGGTTTTGC TACCCAGACA GATGAATCAA AGGCTCAGCA AACTAACTTT GAGCATATGA AAGACAAGCT GCTGGGTGAG CTCAAGAAGA GTTTCCGTCC GGAATTCTTG AACCGCATTG ACAGCGTGGT GGTTTTCCAC TCGCTGAACA AAGAGCAGAT TCGCAGCATT GTTGACCTGA TGCTTAAGAG TGTTATCAAG CAGATGTCTG AAAAGGGTAT CGGGCTTGAA GTGACTGAAT CTGCCAAAGA CCTGCTGGGC AAGAAAGGTT ATGATGAGGT TTATGGTGCA AGGCCGCTGC GCCGCACTAT ACAGACCATG ATAGAAGATC GTCTGTCCGA GGACCTTCTG CGGGCTAAAT TTAAAGCTGG GGATAAAGTG ATAGTGGATA TTGCTGAAGA TGAAATAATT GTCCGTCTGG CAGAGCCGGC TGAGCTTAGT CAGGCTACTT CGTAA
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Protein sequence | MSSRFDKFSE RARRVLTYAQ EEAQNLNHNY IGTEHILLGL VREEEGVAAR VLVNMEVNLA KVRSAVEFIL GRGEHPATSE TGLTSRAKKV IELGIDEARN LGHNYIGTEH LLLGLLREGE GAAAGVLESF GVTVEKVRTE VGRILNQGLN KPKTSRTTPS RTPQLDQLGF DLTAAARTGK LDPVIGRAKE IERVVQILSR RTKNNPALIG EPGVGKTSIV EGLAQRIVSG DVPETLEQKH IISLDVASLV AGTKYRGEFE ERLKKVIEEI KNAGNIILFI DEFHTMVGAG AAEGAVDAAN ILKPSLARGE VQVIGATTLD DFRKYVERDA ALERRFQPVL VEEPAIEDTL NILRGIKERY EEHHKLIISE EAIAAAANMA ARYIPDRFLP DKAIDLVDEA ASRVRIKKRT KPVSLKEMKA IEDSYRRDKE AALATQQYDY ASELRERELQ IAEKIRRMED EWQNEQAMDK PVVGEEDIAQ VVSMWTGVPL VQLTGDETER LLHMEEALHE RIIGQEEAIV TISKAVRRAR AGLKDPRHPI GNFVFLGPTG VGKTELARAL AQFMFGSEDA LVRLDMSEFM EKFAVSRLVG APPGYVGYDE GGQLTEAVRR KSYCLILLDE IEKAHPDVFN ILLQIFDDGH LTDAKGRRVD FRNTIIIMTS NIGAELIRKG SGTIGFATQT DESKAQQTNF EHMKDKLLGE LKKSFRPEFL NRIDSVVVFH SLNKEQIRSI VDLMLKSVIK QMSEKGIGLE VTESAKDLLG KKGYDEVYGA RPLRRTIQTM IEDRLSEDLL RAKFKAGDKV IVDIAEDEII VRLAEPAELS QATS
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