| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_491 |
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| Symbol | rpoD |
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| ID | 8657431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. VS |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013552 |
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| Strand | - |
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| Start bp | 460468 |
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| End bp | 462030 |
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| Gene Length | 1563 bp |
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| Protein Length | 520 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | |
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| Product | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) |
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| Protein accession | YP_003329973 |
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| Protein GI | 270307915 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000448627 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAGCTG AGAAAGATAA GAAGGAATTT AGCCCTGACG ATATCGATGA TGATAAAGAT
GTGGAACAGG GGCTGGCTGA TATCCATGAC GAACAGGATG CCGAAGCAGA AAGTGACAAA
CTGGTAGAGC CTGACCTCAA AGATATAGCC GATACCGACA TACCGGCCGA ACTAACCGAA
GAAGAACTGG CGGCCGAAGC GGATATGATG CCGGACACAG ACGAAGAAAT CGGCCCGCTT
AATATTGACC TTGAAATACC CCTTGAGCAG GTTGATACCC AGGGTATCGT AGATGACCCG
GTACGCATGT ATCTGCATGA AATCGGCAGG GTACCTTTGC TTTCCGCCGA AGACGAAAAA
ACCCTGGCTA AGAAAATGGA AGAAGGCAAA CGCATACGTG AAATCCGTCA GGAGTGCCTT
GAAAAACGCG GACGCTACCC CTCGGCTGCG GAATCTTTCC TGTGCATGCT GAGAGAGCTT
GCCCAAGCTA CCGAGGTGCT TTTCCAACTG GGGCAGGAAC TAAAGGTGGA TACTTCTGCC
AGTCTGAAAA CTATTATCCA CAACCCCAAG CTGAGGGCGG CTATTGACCA TGAGATTGAC
CAGCAGCTTA CCAAAAATAT CTCCGATAAT ACCGGCAAGA GCATGGCGGA GATTGAGCAG
GCATTTATCA ATCTGGCTAT AAACAGCTCC CTTCTGCCCA AGGTTGTGCT GGATGCCATA
CCTGAAAAAA TGACCATACC GGAAATATCA GACCATACCA ACGACCCTGC CTTTATAAGT
CACTTGGAAC GGCATGAGGC CAGCCTGAAA TATTATCTGG ATAACCTTGA GATAGATGCC
AAACGAGCTG AACGTCACCT TATTCAGGCT AACCTTCGCC TTGTTGTCAG CGTAGCAAAA
AAACACATCG GCAGAGGCAT GCCCCTGCTT GACCTAATAC AGGAAGGCAA TATCGGCCTT
ATACGGGCAG TGGAAAAATT TGATTTCCAC CGCGGCTTCA AGTTTTCCAC TTACGCCACA
TGGTGGATAC GTCAGGCAAT TACCCGGGCT ATTGCAGACC AGGCCAGGAC TATTCGCATA
CCTGTCCATA TGGTGGAAAC CATCAACAAG CTGCTGTCCA TAAGCCGGCA GCTGTCACAG
AAGCTGGGGC GTGAACCTAC CCCAGATGAG ATAGCCCTTG AAATGGATTT GCCGCCTGAA
AAGGTACGTG AAATTGCCAA GGTGTCCCAG CTGCCGGTTT CGCTGGAATC CCCTATAGGC
GAAGAGGAAG ATAGTCATCT GGGAGACTTT ATTGAAGACC AGAACGCTCT TGCACCTCCG
GATGCTGCTT CGCGCCAGTT GCTCAAAGAG CAGATAGATA CAGTGCTTGG CAGCCTGACC
CCGCGTGAAC GCCGGGTACT TCAGCTCCGC TTTGGTCTGG AAGACGGCCG AAGCCGTACA
CTGGAAGAAG TGGGCAAAGA ATTTAATGTA ACACGTGAAC GTATCCGCCA GATAGAAGCC
AAGGCTCTGC GGAAACTCCG CCACCCCAGC CGCAGCCGCA AACTGAAAGA TTACCTGGAA
TAA
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| Protein sequence | MPAEKDKKEF SPDDIDDDKD VEQGLADIHD EQDAEAESDK LVEPDLKDIA DTDIPAELTE
EELAAEADMM PDTDEEIGPL NIDLEIPLEQ VDTQGIVDDP VRMYLHEIGR VPLLSAEDEK
TLAKKMEEGK RIREIRQECL EKRGRYPSAA ESFLCMLREL AQATEVLFQL GQELKVDTSA
SLKTIIHNPK LRAAIDHEID QQLTKNISDN TGKSMAEIEQ AFINLAINSS LLPKVVLDAI
PEKMTIPEIS DHTNDPAFIS HLERHEASLK YYLDNLEIDA KRAERHLIQA NLRLVVSVAK
KHIGRGMPLL DLIQEGNIGL IRAVEKFDFH RGFKFSTYAT WWIRQAITRA IADQARTIRI
PVHMVETINK LLSISRQLSQ KLGREPTPDE IALEMDLPPE KVREIAKVSQ LPVSLESPIG
EEEDSHLGDF IEDQNALAPP DAASRQLLKE QIDTVLGSLT PRERRVLQLR FGLEDGRSRT
LEEVGKEFNV TRERIRQIEA KALRKLRHPS RSRKLKDYLE
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