| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1282 |
|---|
| Symbol | |
|---|
| ID | 8658208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1177783 |
|---|
| End bp | 1179459 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | |
|---|
| Product | ssrA integrase |
|---|
| Protein accession | YP_003330710 |
|---|
| Protein GI | 270308652 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00000313732 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGGAA GGGACATGAT GACAGGTGAG GCAAAGAGGG CGGTTGCATA CCTTAGGGTA
TCTTCAGTAT CACAGATAGA CGGGCACTCG CTTGATGCCC AAGAGAGATT ATTTAAGGAA
CTCTGTAAGA ACAGGGGCTG GGAAATAATC CGTATCTACC GTGAAGAAGG CAGATCTGCC
CATGTAGAGG ATATCCATAA GAGGCCTATC TTCAAAGATC TCCTGGGAGA CGCCAAGAAG
GGAATGTTTG ACGTAGTTGT CGTCCATACC CTGGACCGCT GGTCACGCAA CTTAAAAGTA
ACCATAGAAT CTTTGAACTT GTTAGGTAAA TATAATGTTG GGCTTGCCTC CATAGTTGAG
AGTTTGGATT ACTCCAACCC TCAAGGAATG CTGTCGCTTC ACATGCTTGG GGCCTTTGCA
CAGTACTTCA GCGAATCCTT GAGCACCCAT ATAAAGAAGG GGATAGAGCA GAGAGCAGTG
GAGGGTAAGC GCAACGGAGC TGTGCCTTTT GGATATGAGT CATGCTGGGA GAAAGAGGAA
AATGGAGAGA AGAAGAGGAG ATGCAATCCA GAACACCCGG GAGGAGTGCA TATCCACCGC
AGAGAAGGTA AGGCAGTTAA GGAGCTTTAC AAGCGTTATG CTGCAGGGAC TGTTACCTTA
TCAGAGCTTG CTTCATGGCT TAATGATGAG GGCTTCCGAA CCCGTAATAC CAAAAAGATA
GAGGATGCCT GTGGTAACTT AACCACAGGA CCAAAACTGT TTACCGGGGC TTCGGTAAGG
TTTATTCTGC ATAATCCTTT CTACATGGGA AAGATAAAGC ATAGGGATAA GTTGCTTCCT
GGAGTACATA AACCACTAGT CACTAAGAAG CTCTTTGACT TAGTACAAGA TACCCTTAAG
AAGAACTCGG GCAGATCTTC AACACTTTGT CCTAAATCTA ATAGAGAATA CCTGCTTAAA
GGACTTGCCA GGTGTGCTTA TTGCGGTATG CCAATGTGGG CTCAGACTTA TCATAATGGC
GGAAGGTATT ACCGGGAGCA CAGGGCGTCA AGAAGCATTG AGCAGTGCGT TGCCCACGGG
GGCACCATCC CTTGTGAGGT AGTAGACAGG CAGATGATAG AACTGGTTAG TGCCATAGAG
CTTAAAGAAT CGTGGCTTGA AGAAGTGCTA TCTGTTATCA GTTTAAAAGA TGAAGTGGAT
AGGGTAACCA AAGAAAGGGA ACAGGTTAAC ATTAAACTTA AGCGTATGGC TAAGGCTTAT
ATAGACGGAC TTATATCAGA TGATGAATAC AATAGGCAGA AGAAGGTATA TGGGTTGGCA
CTAGAGTCAT TGGTAGTTTC TGACTATAAT GCTTCCGAGG AAGCGGGTAA GCTTATCATG
AACCTCCTCT CTTTATGGGA TAAGGCTACA TTATCAGAAC AAAGAAAGCT TCTTCTCACC
ATGCTTGATG CCGTGTATAT AGACTTTAAG AAGAGCAAGT CTATTATAGC GGTTAAACCG
AAACCACCTT TTAAGCCTAT CTTTCAGGTG GCTGTATCCA AGAAGGATTC TAAGATACGT
ATCTTAAATG AGCCGTTTGG CAAGGGGCCT ATTGGCTCAT CATTGTTCTT GGTGGAGACG
GGGGAGGGTC GAACTCCCCG TCCAGAAAAG ATGACCCAGG ATCTACTACA GGATTAG
|
|---|
| Protein sequence | MQGRDMMTGE AKRAVAYLRV SSVSQIDGHS LDAQERLFKE LCKNRGWEII RIYREEGRSA
HVEDIHKRPI FKDLLGDAKK GMFDVVVVHT LDRWSRNLKV TIESLNLLGK YNVGLASIVE
SLDYSNPQGM LSLHMLGAFA QYFSESLSTH IKKGIEQRAV EGKRNGAVPF GYESCWEKEE
NGEKKRRCNP EHPGGVHIHR REGKAVKELY KRYAAGTVTL SELASWLNDE GFRTRNTKKI
EDACGNLTTG PKLFTGASVR FILHNPFYMG KIKHRDKLLP GVHKPLVTKK LFDLVQDTLK
KNSGRSSTLC PKSNREYLLK GLARCAYCGM PMWAQTYHNG GRYYREHRAS RSIEQCVAHG
GTIPCEVVDR QMIELVSAIE LKESWLEEVL SVISLKDEVD RVTKEREQVN IKLKRMAKAY
IDGLISDDEY NRQKKVYGLA LESLVVSDYN ASEEAGKLIM NLLSLWDKAT LSEQRKLLLT
MLDAVYIDFK KSKSIIAVKP KPPFKPIFQV AVSKKDSKIR ILNEPFGKGP IGSSLFLVET
GEGRTPRPEK MTQDLLQD
|
|---|
| |