Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_1234 |
Symbol | |
ID | 8658162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | + |
Start bp | 1139392 |
End bp | 1139973 |
Gene Length | 582 bp |
Protein Length | 193 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | |
Product | 2 -5 RNA ligase |
Protein accession | YP_003330669 |
Protein GI | 270308611 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.00152481 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCTGAAG AACTTGTCCG CACGTTTATT GCCATAGAAC TGCCGCCTGA GCTTAAAACC GCACTCGGCA GTTTCCAGAA TTCCCTTTCC ATACCCACCC AAGCTGTAAA ATGGGTAAAC CCCGAATCAA TGCACCTAAC CATCAAATTT TTGGGGGATA CACAGCTAGG CCAAATATCA AATATCATAA AAGGGCTGGA GAAAGCCGCG CAGGTTTGCT CTTCCTTTTC CCTATGCACC AACCGTATAG GGGCTTTCCC CTCACTTTCA AGCCCAAAGA TAATCTGGCT GGGGCTGGAG GGTGAGATAG AAAAACTAAA TACCCTCTTT GCGGAGGTTG AAAAAAATAT TTCAGGGCTG GGATTTCCGG CAGAACAAAG GGAATTCGCC CCCCACCTGA CCTTAGGACG TCTTAGGGAA AGTGCTTCCA AAATTGACCT GCAAACCGCT GCCGAAACCC TTAAAACCAC ACCCCCTGTT CCTAAAACCA GTTTCAAAGC CACCCATATC CATCTCTTTA AAAGCCAGCT TTTACCCGCA GGGCCAATAT ACACCAAGCT GGCCAAAATC AGCCTTGCAT AG
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Protein sequence | MAEELVRTFI AIELPPELKT ALGSFQNSLS IPTQAVKWVN PESMHLTIKF LGDTQLGQIS NIIKGLEKAA QVCSSFSLCT NRIGAFPSLS SPKIIWLGLE GEIEKLNTLF AEVEKNISGL GFPAEQREFA PHLTLGRLRE SASKIDLQTA AETLKTTPPV PKTSFKATHI HLFKSQLLPA GPIYTKLAKI SLA
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