| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1211 |
|---|
| Symbol | |
|---|
| ID | 8658139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1124153 |
|---|
| End bp | 1125412 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | peptidase, M16 family |
|---|
| Protein accession | YP_003330651 |
|---|
| Protein GI | 270308593 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.150859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGTATGAAT TAAGTGTTTT GCCAAGCGGT TTGCGGGTAA TAAGCCACCA TATGCCTGCC
AGCCGTTCGG TTACCATTTG CGTATATATC GGGGTGGGTT CGCGTTATGA AACAGACTGC
GAGGCCGGTG CCAGCCACTT TATAGAACAC ATGGTATTCA GGGGTAGCAA AAAGTATCCT
GATTCCCAGC TTATTTCCAG TGCCATAGAG GGGGTGGGGG GTATTTTGAA TGCGGCTACC
GACCGTGAGT CTACCCTTTA TTATGCCAAA GTGGGCAGTG ACAAGTTTGC TCTGGCATTA
GATGTGCTTT CGGATATGCT TGTAACCCCC CTGTTTAACC CCGAAGACCT TGAAAAAGAA
CGCAAGGTAA TCTATGAAGA AATAAGCATG AGCCTGGACA ACCCTTCCCA CCGGGTGGGG
CTGCTGCTTG ATGAGATACT CTGGCCGGAT CACCCGCTGG GGCGGGATAT TGCAGGTACT
CGACAGAGCG TGGCAGGGCT GGACAAACAA AAATTGCAGG CTTTCATGCA CAGCCATTAC
AACCCTGCCA ATATAGTGGT GGCAGTAGCC GGAGATATAA AGCACAAGAG TGCCGTGGCG
GCTATTTCCC AGGCCTTCAG TGGTTTGCGC GGGAAGAATG AAATACAGTC TTTTGCCCCA
TATCATTATG GCAATCCTTG CCAGATAGGG GTGGACAAGC GAGATGCGGA GCAGATTAAC
CTGATGATAG CCATGCCGGG CATGAACCGT CTGGATGACT GCCGTTATGC TTTCAGCATA
TTAAACACCA TATTGGGTGA TGGTATGAGC AGCCGCCTTT TTGCCCATGT CAGGGATAAT
TTGGGCTTAG CCTATTCTGT CCAGTCCGGT ACGGAGTTTT TGCATGATAC AGGGGCTTTT
TCCATATATG CCGCAGTAGA TCCTGCCAAT CTGACGGCCT GTGTCGAAGC TATACTTACG
GAACTGGAAA GCGCAAAAAC AACCATAACG GCTGAGGAGT TGACAAAAGC CAAGGAAATG
TCTAAGGGAC GGATACATCT GGCTATGGAA GACAGCCGTT ATATGGCTAA ATGGATAGGC
TCTCAGGAAC TGCTGTGCCG AAGGGTGAAT ACCCATGAAG ACGTTATTCG TCTGATAGAC
GAGGTAAGTC TGAAAGCTGT AATGGAATTG GCGGGTGAGT ATTTTAGGAA ACCTGAAATG
CGGCTGGCTC TGGTAGGGCC GGTAGACAAA GAAGCAGTGG CGGGTTTACT GAAAGGCTAG
|
|---|
| Protein sequence | MYELSVLPSG LRVISHHMPA SRSVTICVYI GVGSRYETDC EAGASHFIEH MVFRGSKKYP
DSQLISSAIE GVGGILNAAT DRESTLYYAK VGSDKFALAL DVLSDMLVTP LFNPEDLEKE
RKVIYEEISM SLDNPSHRVG LLLDEILWPD HPLGRDIAGT RQSVAGLDKQ KLQAFMHSHY
NPANIVVAVA GDIKHKSAVA AISQAFSGLR GKNEIQSFAP YHYGNPCQIG VDKRDAEQIN
LMIAMPGMNR LDDCRYAFSI LNTILGDGMS SRLFAHVRDN LGLAYSVQSG TEFLHDTGAF
SIYAAVDPAN LTACVEAILT ELESAKTTIT AEELTKAKEM SKGRIHLAME DSRYMAKWIG
SQELLCRRVN THEDVIRLID EVSLKAVMEL AGEYFRKPEM RLALVGPVDK EAVAGLLKG
|
|---|
| |