| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1200 |
|---|
| Symbol | pncB |
|---|
| ID | 8658128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | + |
|---|
| Start bp | 1113158 |
|---|
| End bp | 1114159 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | nicotinate phosphoribosyltransferase |
|---|
| Protein accession | YP_003330640 |
|---|
| Protein GI | 270308582 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 48 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTA AACCGAAGTT TAATATACCC GGAAACCTGC TCTCAGGGGA TACCACTGAT
ATTTATTTTG CCCGTACAGT GGAAATACTG ACCAAGGAAA ACCAGAATCC TTTAGCAGTG
ATGGAAGTAT TTGCCACCCG GCCGGGTATT CTGTGCGGCC TGAGCGAGGC TGTAGAGCTT
CTGCAGGCGA TATTACCGGC GGACGAGGGC GAAATATGGG CTTTGGAAGA CGGCGACCAG
ATTTCCGCTA AGGAAGTTGT CATGCGCATC AAAGCTCCTT ATCTGAGCTT CGGTCTTTAT
GAGACTGTTT ATTTAGGCAT GCTGGCTTCA GGTACAGGCT GGGCAACCGC CGCCAGTGAA
TGTGTTGAAG CAGCAGGGGA TATACCAGTT ACCAGCTTTG GTGCACGCCA TATCCACCCG
CTGGTTGCCG GACGCATGGA TTATGCTGCT ATAGTGGGTG GGTGCAAAGG CTGTTCATCT
ATTGAAGGTG CACGGTTATC AGGAATCAAC CCTTCGGGCA CCATTCCCCA TGCCCTGATA
CTGGTCATGG GTGATACTTT AAAAGCCACC CTGGCTTTTG ACAAACACAT GCCGCCCCAA
GTACCCAGAA TAGCTCTGGT GGACACCTTT AAAGACGAAG TGGAAGAAAG CTTGCGGGTA
GCCGTTGCCA TGGGACAAAG GCTGGACAGT GTCAGGCTGG ACACCCCCCT TGAGAGAGGC
AGAGTCACAG CCGATTTGGT TAAAGAAGTA CGGGCCAATC TGGATATGGA CGGACACAAA
CACGTTAAGA TATTTGTCTC AGGCGGCCTT ACCCCGGAAC GTATCCGCTA CTTTGCGGAG
AATAACGCCC CGGTAGACGG CTACGGCACA GGCAGTTATA TAAGCGGTGC CCGCCCTATT
GATTTCACCG CAGATTTGCA CGAAATTGAT GGCAAACCGA TAGCCAAGCG GGGGCGGATA
CCCGGTCTTG CCCAAAACCC CCGCCTCAAA AAAGTACGCT AG
|
|---|
| Protein sequence | MSIKPKFNIP GNLLSGDTTD IYFARTVEIL TKENQNPLAV MEVFATRPGI LCGLSEAVEL
LQAILPADEG EIWALEDGDQ ISAKEVVMRI KAPYLSFGLY ETVYLGMLAS GTGWATAASE
CVEAAGDIPV TSFGARHIHP LVAGRMDYAA IVGGCKGCSS IEGARLSGIN PSGTIPHALI
LVMGDTLKAT LAFDKHMPPQ VPRIALVDTF KDEVEESLRV AVAMGQRLDS VRLDTPLERG
RVTADLVKEV RANLDMDGHK HVKIFVSGGL TPERIRYFAE NNAPVDGYGT GSYISGARPI
DFTADLHEID GKPIAKRGRI PGLAQNPRLK KVR
|
|---|
| |