Gene DhcVS_1130 details

Gene Information

• Locus tag: DhcVS_1130
• Symbol: rpoE
• ID: 8658059
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 1042279
• End bp: 1042818
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 48%
• Product: RNA polymerase sigma-70 factor, ECF subfamily
• Protein accession: YP_003330572
• Protein GI: 270308514

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.938596
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCAAACAG AGAGACACCT GGTTGAGCTT GCTCAACAAA AAGACGAGCA GGCTTTTGCC 
AGATTGTACG AGGAATATTT TGATAAGATT TATCGCTATA TTGCCTTGAA GATCGGCAAT 
AAGATGGAGG CCGAAGATTT GACCCAGCAG GTCTTTATGA ACATGCTCCG GTCTATATCT 
TCCTTCAAGT GGCAGGATAA TACCCCGTTC TCTGCCTGGT TGTACCGTAT TGCCCATAAT 
CAGATTGTAG ACTATCTGAG GAAAAAAAGC CGCCAGCTCA CGGTGGATAT AGAACTGGTG 
ACCCCGCTGG CCTGCTCTGA TGACCCGGTG GAAACTACCG AAGTGAATAT AGACTATGAA 
AAGTTTGTGG AGGTATCCGG TAAACTTACA CCCGCCCAGC AGGAGGTTAT TTCCCTGCGT 
TTTTCCTCGG ATTTGCCGAT TACCGAGGTG GCCAAAATAA TGAATAAAAC TCCGGGTGCG 
GTCAAGGCGC TGCAGCACAG TGCAGTGTCA TCACTCCGCC GAATGCTCTC TGGAGCGTGA 

 

Protein sequence

MQTERHLVEL AQQKDEQAFA RLYEEYFDKI YRYIALKIGN KMEAEDLTQQ VFMNMLRSIS 
SFKWQDNTPF SAWLYRIAHN QIVDYLRKKS RQLTVDIELV TPLACSDDPV ETTEVNIDYE 
KFVEVSGKLT PAQQEVISLR FSSDLPITEV AKIMNKTPGA VKALQHSAVS SLRRMLSGA