Gene DhcVS_1064 details

Gene Information

• Locus tag: DhcVS_1064
• Symbol: mfd
• ID: 8657995
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. VS
• Kingdom: Bacteria
• Replicon accession: NC_013552
• Strand: -
• Start bp: 988880
• End bp: 992344
• Gene Length: 3465 bp
• Protein Length: 1154 aa
• Translation table: 11
• GC content: 48%
• Product: transcription-repair coupling factor (superfamily II helicase)
• Protein accession: YP_003330509
• Protein GI: 270308451

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.566316
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGTTTGG AGAAGATATT GAATCTTAGC GGTTTGTTGC CTCTTATAGA CCAAAGCCCG 
TTATTTGACA GCCTGTTTCA AGCTCTGGAT AGGGGTGAAG CTGATATTTC GGTTTTAGAT 
GCGGGGCGGG GGTTTAGTCT GGCATCTGTA TACCGCAGGT TAAAATGCCC CATGCTGGTT 
ATTACCTCGC AGCCGGAGCG GGCAAGGGAA CTTTTGGAGC AGATAGCTGC TTATACAGGA 
GAGGAGCCGG GTTTTCTGCC TGACCCCAGT CTGCTGCCTT ATCAGCGGGC TGTTTCTGAC 
CGTAATTCTT CACTGGAAAA GATGCGGCTG GCAGGCATTC TGGGCGGGTA TATCCGCAGC 
GGAGATTCAC GGATAATAGT TACGGCTGTG CCGGCTTTGC TGCAGCGGTA CGTTTCTCCG 
GAAATATTTA AACAATCTTT TATACAAGTC TGGGCCGGGT TGGAAATAGA ACCCCAGGAC 
TTAATCAGCC GTTTTCAGCA GTTGGGATAC CGTCAGGAAA GCATAGTGGA GATACCGGGT 
ACATATTCCC ATCGGGGCGG CATACTGGAT ATTTTCCCTC ATACCGAAGA TAATCCGGTA 
AGGCTGGAAT TTTTCGGTAA TACTCTGGAA AGTCTGCGTA ATTTTGATCC CAAGAGCCAG 
CGTTCGGGAA AAGCGGTAAA TGAGCTTACT ATAAGCCCCG CAAGTGAGCT TTTTCATCTG 
GGGCAGCTGA CCCGTAAGGA CATTAATAAC CGGCTGGATA TTTTGCTCAC AGATAATCTA 
AATCCCGAAT TCAGCCGTAC TCTGTCAGCA GATATAAACC ATCTTAACGA GGGCCTGAAA 
CCCGAATACC CCGAATTTTT CGCTCCTCTT TTTAATACCT CAAGCATACT TGATTACCTT 
CCGTCAGATG CTCTGGTAGT GCTGGATGAA CCTGCCTCCA TAGAGCAGGC AGCTTTTCAT 
CTGGATAAAG AAGCCGAAGA ACTGCGCTCT GACCGTCTGT CACATGGTGA ACTTCCTTCC 
GTTTATCCCC GTCCGTATTT TAACTGGGCA GAGATATCCG CCATGCTGAA AACCAAAAAA 
CGGCTTATTA TGGCCTCCTT CGGGCGGGAG AGTGAGTCTT TAAAGCTGGA TTTTGCTTCC 
CCGGATAATT ATGTAGGGCG TTTATCCGGT TTGTATGAAA AATTGCCGGA ACTAAAAGGA 
CACACTGGCA GAGTGGTTAT TGTCAGTCAT CAGGCCGCCC GTCTAGCTGA GCTTTTAAAA 
GAGCGCAGTA TTTTGGCGGT TGTCCAGACA GATGTATTAA CCCCCCCTCC GCCTGCCAGT 
CTCAGTCTGG TTCAAGGGAT ACTGGGTTCC GGCTGGAGTT TAAGTGATAA CTTGCATATT 
CTCACTGATG CCGAACTTTT CGGCTTTGTA AAACAGCGGC GTCTACCTTC CAAGCGTCCG 
TCTGCCCGTA AGGGTGTGGT GCTGGATATA AAACCGGGTG AATTTGTGGT GCATATAGAC 
CATGGTGTGG CTTTGTTCAG CGGGGTCAGC CATATGAACC GTGATGGTAT GGATAAAGAG 
TACCTGATAC TCCAGTATGC CGGCGGTGAC AAACTTTATG TGCCGACAGA CCAAATGGAC 
AGAGTAAACC GTTTTATAGG CAGCGGAGAT GAACCGCCGT CTTTGCACCG CTTGGGTACT 
CAGGAATGGC AAAGGGCAAA AGAAAAGGCC AGTGAATCCG CGGAGGAAAC TGCCCGCGAA 
CTCCTTGATA TCTATGCTAA ACGCGAGTTG GCAAATGGCT ATGCATTTTC GGCAGATACT 
GTCTGGCAGC AAGAAATGGA GGCATCCTTT CCGTATGTGG AAACTCCTGA CCAGCTGAAA 
GCTCTGTGCG ATATCAAAGA AGATATGGAA AAAACCCGCC CTATGGACAG GCTTATACTG 
GGGGATGTTG GCTACGGTAA AACCGAAGTA GCTATACGGG CAGCTTTCAA GGCGGTCATG 
GACGGCAAGC AGGTGGCAGT GTTGGTACCT ACTACAGTGC TTGCCCAGCA GCATTACACT 
ACTTTCCGTG AGCGGCTGGC TACTTTTCCG GTCAAAGTAG AGGTGCTTAG CCGTTTTCGC 
AGCCAGTCCG AACAGAAAGA AGTGGTTGAA AATATGGAAA AAGGCGAAGT GGATATCTGC 
ATAGGTACTC ACCGCCTGCT TCAGGCAGAT ATAAAGTTTA AAGATTTGGG ACTGGTAATT 
ATAGACGAAG AGCAACGCTT CGGGGTAGCG CACAAGGAAT TTTTCAAGAA ACTGCGTGCC 
CAGGTAGATG TGCTTACCCT TAGTGCAACA CCCATTCCCC GTACTTTGCA TATGTCTATG 
GTTGGGGTAA GGGATATGAG TGTTATAGAA ACTCCGCCCG GTGAACGCCT GCCTATTAAA 
ACCGTAGTAG CTGCTTTTGA TGAACGGCTG ATACGTGAAG CTATACTGCG GGAGATGGAA 
AGGAACGGGC AGGTATTTTT CGTGAGTAAC CGGGTAATGG GCATAAATTT ACTTGCAGAG 
CGTATTCAGA AGCTTGTCCC CGAAGCCCGT ATAGGTATCG GGCACGGGCA GATGGCTGAA 
GATAAGCTAG CCGCCGTAAT GGCTGATTTT GTGCGGTATG AACTGGACGT GCTGGTATGT 
ACTACTATTA TAGAATCCGG AGTGGATGTG CCGAATGCCA ATACCCTGAT TATAAACAGG 
GCAGACCGCT TTGGGCTTAC CCAGCTTTAC CAGCTGCGGG GGCGGGTGGG GCGGAGCTCC 
CAGCTGGCAT ATGCCTATTT CCTGTATGAC AAAGAAAAAC ACTTAAGCGG TGATGCTGAA 
AAACGCCTGA AAACTATTTA TGAAGCAGCT GAACTTGGGG CAGGATATGG TATTGCCATG 
AAAGATTTGG AAATAAGGGG TGCAGGAACA CTGCTTGGCG TAAAACAATC AGGTTATATA 
AATTCGGTCG GTTTCAACCT ATACACCCAG ATGCTGTCAG AAGCAGTAGC CGGACTGAAA 
GCTGCCGGAA GCGGGCTTTC CAAAGAAGAA ATACGCATCC AGAATATGCC TGCCCCCAAG 
CTGGATTTAC CCTTAGACGC ATTTATACCC GAATACTATA TCCAGGATCT GGATTTACGT 
TTGTCTATTT ACCAGCAGTT ATCAACTCTG GCCAGTCTGG CAGGCGTTCT GGAAAAGGAA 
AAAGAACTGA CAGACCGGTT CGGGGTAATG CCAAAGGAAC TTGAAAATCT GCTATATTCA 
TTCCGTTTAC GTTTGCTGGC TAAAAAAGCC CACGTGGAAA CTATCGTAAC CGAAGGCAGC 
CAGATAGTAG TGCGGATGCT GGGCGGGCTG ATAATAAATA AAGCTTTGCT TGAACCGCTT 
AAAGCGGGAG TGGTGGCAGG GCGTAATCAG GTGGCTATCC AGTTCAGAAA GACTGGCGAT 
AGTTGGAAAG AAGTGTTAGA AGAGATTATC TGGCGGCTGG GGTAG 

 

Protein sequence

MCLEKILNLS GLLPLIDQSP LFDSLFQALD RGEADISVLD AGRGFSLASV YRRLKCPMLV 
ITSQPERARE LLEQIAAYTG EEPGFLPDPS LLPYQRAVSD RNSSLEKMRL AGILGGYIRS 
GDSRIIVTAV PALLQRYVSP EIFKQSFIQV WAGLEIEPQD LISRFQQLGY RQESIVEIPG 
TYSHRGGILD IFPHTEDNPV RLEFFGNTLE SLRNFDPKSQ RSGKAVNELT ISPASELFHL 
GQLTRKDINN RLDILLTDNL NPEFSRTLSA DINHLNEGLK PEYPEFFAPL FNTSSILDYL 
PSDALVVLDE PASIEQAAFH LDKEAEELRS DRLSHGELPS VYPRPYFNWA EISAMLKTKK 
RLIMASFGRE SESLKLDFAS PDNYVGRLSG LYEKLPELKG HTGRVVIVSH QAARLAELLK 
ERSILAVVQT DVLTPPPPAS LSLVQGILGS GWSLSDNLHI LTDAELFGFV KQRRLPSKRP 
SARKGVVLDI KPGEFVVHID HGVALFSGVS HMNRDGMDKE YLILQYAGGD KLYVPTDQMD 
RVNRFIGSGD EPPSLHRLGT QEWQRAKEKA SESAEETARE LLDIYAKREL ANGYAFSADT 
VWQQEMEASF PYVETPDQLK ALCDIKEDME KTRPMDRLIL GDVGYGKTEV AIRAAFKAVM 
DGKQVAVLVP TTVLAQQHYT TFRERLATFP VKVEVLSRFR SQSEQKEVVE NMEKGEVDIC 
IGTHRLLQAD IKFKDLGLVI IDEEQRFGVA HKEFFKKLRA QVDVLTLSAT PIPRTLHMSM 
VGVRDMSVIE TPPGERLPIK TVVAAFDERL IREAILREME RNGQVFFVSN RVMGINLLAE 
RIQKLVPEAR IGIGHGQMAE DKLAAVMADF VRYELDVLVC TTIIESGVDV PNANTLIINR 
ADRFGLTQLY QLRGRVGRSS QLAYAYFLYD KEKHLSGDAE KRLKTIYEAA ELGAGYGIAM 
KDLEIRGAGT LLGVKQSGYI NSVGFNLYTQ MLSEAVAGLK AAGSGLSKEE IRIQNMPAPK 
LDLPLDAFIP EYYIQDLDLR LSIYQQLSTL ASLAGVLEKE KELTDRFGVM PKELENLLYS 
FRLRLLAKKA HVETIVTEGS QIVVRMLGGL IINKALLEPL KAGVVAGRNQ VAIQFRKTGD 
SWKEVLEEII WRLG