| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Xcel_0330 |
|---|
| Symbol | |
|---|
| ID | 8647832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylanimonas cellulosilytica DSM 15894 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013530 |
|---|
| Strand | - |
|---|
| Start bp | 386912 |
|---|
| End bp | 389518 |
|---|
| Gene Length | 2607 bp |
|---|
| Protein Length | 868 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_003324927 |
|---|
| Protein GI | 269955138 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.879636 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCGC CGTTCGCCTT CCACCGGTAC TGGAAGGATG GAACCGTGCC CCCAGCCGAC
GCCCACCCGC TGCTCGACGT GCTCCTCGCG GGCGGCGCGC GGGCCGACCG GCTGACGCAC
GTGCGGACCC TGCCAGCGCG CGACGGCGCC ACGGCCGACT GGCCGTCCTG GGCGGACCCT
GCGCTGGTCG CCGGGTACCA GTCCCTCGGC GTCGCGCGCC CCTGGGTGCA CCAGGCCTCC
GCCGCGTCCG CCGCGTGGTC GGGCCGCCAC GTCGCCCTCG CGACGTCGAC CGGCTCGGGC
AAGTCGCTCG CGTTCTGGCT GCCCGCACTC ACCATCATCG GCCGCACCCA GCCACCGCAA
CAGCGCGGAT CCGTTCTCTA TCTCTCGCCC ACCAAGGCGC TCGCGGCCGA CCAGCTCGCC
GCGCTCGAAC GCGTGCTCGC CGCCATGCCC GCCGACGCCG GGCGTCAGCT CCGGGTCACC
ACCTGCGACG GCGACACCCC CACCGACGAG CGCCGGTGGG TGCAGGACTA CGCCGACGTC
GTCCTCACCA ACCCCGACTT CCTGCACTTC TCACTCCTGC CGAACCATCG GCGGTGGTCG
CGGTTCCTGC GGGCGCTGCG GTACGTCGTC GTCGACGAGG GCCACACGTA CCGCGGCGTG
TTCGGGGCGC ACGTGTCCCT GGTGATGCGG CGGCTGACCC GGCTCGTGGA GCACCACCGC
GGGGGCGCGC TGACGTTCGT CGTCGCATCG GCAACGTCGG CGGAGCCCGC GGCGAGCGCC
GCGCGGCTGC TCGGCGTGTC GCCCTCCGAC GTCGAGGCTG TGACCGAGGA CGCCTCGCCG
TCGGGCCGCC GCACCGTGGC GCTGTGGCAG CCGCCGGAGA TCGCGTCGTT CGCGTTCACC
CGGGCGGACC CGCACGAGGA CGACCCGTGG GCGCTGCCCG ACCCGCTCGA CCCCGCGCAC
GAGGAGGCGG AGCAGACCGC CGTCGTGACC GCCGACGGCG CGGCGGACCA CCCGCGGCGC
AGCGCCACCG CGGAGGTCGC GGACCTGCTG GCGGATCTCG CCGCGCACGG CGCTCGGACG
CTGGCGTTCA CCCGCTCGCG GCGGGGTGCG GAGTCGGTGG CGCAGGCGGC CCGCGACCAT
CTGCGACCGG TGTCGACTGA CCTGTCGCGG CGGATCGCCG CCTACCGCGG CGGGTACCTG
CCCGAGGAGC GGCGCGAGCT CGAGGAGTCC ATCCGCAGCG GGGCGCTGCT GGGCCTCGCG
ACGACGAACG CGCTCGAGCT GGGCGTCGAC ATCTCCGGTC TGGACGCGGT GCTCATCGCG
GGCTGGCCCG GAACCCGCAT GTCGCTGTGG CAGCAGGCCG GGCGGGCCGG GCGCGCGGGA
GCCGACGGGC TCGTCGCGTT CGTCGCCCGC GAGGACCCGC TCGACACCTA CCTGGTGACC
CACCCGGAGG CCGTGTTCGA CGCCCCGCTC GAGGCGACCG TGTTCGACCC GTCGAACCGG
TACGTGCTCG CGCCGCAGCT CTGCGTGGCC GCCCAGGAGG TGCCGCTGCG CAGCGAGGAG
CTGAGCCGCT TCGGGGACCC CGACCTGGTG CGCGGCGTGC TCGACGAGCT CGTCGAGGGC
GGTGCGCTGC GCCGTCGGCC GTCCGGCTGG TACTGGACGC ACGCCCAGCC CGCAGCGCCG
ATGGCCGACC TGCGCGGTTC GGGCGGACGG CCCGTGCGGG TCGTCGAGGC GACCACCGGG
CGCCTGCTCG GCACCGTCGA CGCCGGGTCC GCCGACGGGC AGGTGCACGA CGGCGCCGTG
TACGTGCACC AGGGCACGAC GTTCGTGGTC GACCACCTCG ACCTCACCGA CCGGGTGGCG
CTCGTGGTGC GGCGCGACGT CGACCACGGG ACGTGGTCGC GCGAGGTGAT GACGATCGCG
ATCGAAGAGC CCGAGCCACA CACGTCACCG GTGGTCGATC CTGTCGAGAC CACGACACCG
GCGGCCGAAC CCCCCACAGC ACCGGTGGTT GAGCCTGTCG AAACCACGAC CGGTTCCACC
CTGCGGCGCG CGTGGGGTCC GGTCTCCTGG GGCCTCGGCC CCGTCGACGT CACCAGCCAG
GTGATCAGCT TCGAGCGCCG TCGGGTCCCC GACCTTCAGG TGCTCGGCAC GGAACCGCTC
GACCTGCCCG AACGGTCCCT CGCGACGACG GCGGTGTGGT GGTCGGTGCC GGACTTCGTG
CTGCGTGCGG CCGGACTGAG TCCCGATGTC GTCCCCGGGG CGCTGCACGC GGCCGAGCAC
GCGTCGATCG GCCTGCTCCC CCTGCTCGCG ACGTGCGACC GCTGGGACCT CGGCGGCATC
TCCACCGATC TGCACCCCGA CACGGGCGAG GCCACCGTGT TCGTCTACGA CGCCTACCCC
GGTGGCGCGG GCTTCGCCGA GCGCGGGTAC GAGCTCGGCG CCACCTGGCT GCACGCCACC
CGCGATGCCA TCGCCTCGTG CCCCTGCGAC CACGGCTGCC CCGCCTGCGT GCAGTCACCG
AAGTGCGGCA ACTACAACTC ACCGCTCGAC AAGGCCGCGG CCGTGGTGCT CCTCGACGCG
GTGCTGGGGC ACGCGCCGCC CGAGTGA
|
|---|
| Protein sequence | MAAPFAFHRY WKDGTVPPAD AHPLLDVLLA GGARADRLTH VRTLPARDGA TADWPSWADP
ALVAGYQSLG VARPWVHQAS AASAAWSGRH VALATSTGSG KSLAFWLPAL TIIGRTQPPQ
QRGSVLYLSP TKALAADQLA ALERVLAAMP ADAGRQLRVT TCDGDTPTDE RRWVQDYADV
VLTNPDFLHF SLLPNHRRWS RFLRALRYVV VDEGHTYRGV FGAHVSLVMR RLTRLVEHHR
GGALTFVVAS ATSAEPAASA ARLLGVSPSD VEAVTEDASP SGRRTVALWQ PPEIASFAFT
RADPHEDDPW ALPDPLDPAH EEAEQTAVVT ADGAADHPRR SATAEVADLL ADLAAHGART
LAFTRSRRGA ESVAQAARDH LRPVSTDLSR RIAAYRGGYL PEERRELEES IRSGALLGLA
TTNALELGVD ISGLDAVLIA GWPGTRMSLW QQAGRAGRAG ADGLVAFVAR EDPLDTYLVT
HPEAVFDAPL EATVFDPSNR YVLAPQLCVA AQEVPLRSEE LSRFGDPDLV RGVLDELVEG
GALRRRPSGW YWTHAQPAAP MADLRGSGGR PVRVVEATTG RLLGTVDAGS ADGQVHDGAV
YVHQGTTFVV DHLDLTDRVA LVVRRDVDHG TWSREVMTIA IEEPEPHTSP VVDPVETTTP
AAEPPTAPVV EPVETTTGST LRRAWGPVSW GLGPVDVTSQ VISFERRRVP DLQVLGTEPL
DLPERSLATT AVWWSVPDFV LRAAGLSPDV VPGALHAAEH ASIGLLPLLA TCDRWDLGGI
STDLHPDTGE ATVFVYDAYP GGAGFAERGY ELGATWLHAT RDAIASCPCD HGCPACVQSP
KCGNYNSPLD KAAAVVLLDA VLGHAPPE
|
|---|
| |