Gene Sked_31040 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_31040 
Symbol 
ID8634737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp3456188 
End bp3456946 
Gene Length759 bp 
Protein Length252 aa 
Translation table11 
GC content70% 
IMG OID 
Productflagellar biosynthetic protein FliR 
Protein accessionYP_003315835 
Protein GI269796380 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.567657 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCTCA GCCTCTCCCT CGGCGCGCTC GAGTCCCTCA TGCTCGTGGG CGTGCGCATG 
GTGGCGTTCC TCGTCGTCGC GCCGCCGTTC TCGCACCGCG GCATCCCCGC GACCGTCAAG
GTCATGCTGG CGACCGGTCT CGCGCTCGCC GTCTCGCCGC GCGTGGAGAA CCTGGTCCCG
GACAGCACCG GCGAGTACGT CGTGCTGCTC GTGGGGGAGG CCATCATCGG AGCCGGGCTG
GGGTTCCTCG TGGCGGTCGT GTTCTCGGCC GTCCAGTCGG CGGGCGCGCT CATCGACCTC
ATGGGCGGGT TCTCGCTGGC CCAGGGCTTC GACCCGATGA CCCAGGTCAA CGGCGCGCAG
TTCGCCCGGC TCTACCAGCT GACCGCCGTG GTCATCCTCT TCGCCTCGAA CGGCTACCAG
ATGGTCATCG GCGGGCTCGT CCGGACCTTC GACGCGCTCC CGCTCGGGTC CACCCTCGAC
CTCGCCCGCC TCGGCGAGGC CCTCACGTCG AGCCTCACGG GCATGTTCCT CGCGACGCTG
CAGATCGCCG GGCCGCTCGT GGTCGTGCTG TTCCTCGCCG ACGTCGGCCT CGGCCTGCTC
ACCCGTGTGG CTCCCGCGCT CAACGCCTTC GCGCTCGGCT TCCCGCTGAA GATCTTGCTC
ACGCTCAGCC TCGCGTCGCT CACCTACCTC GCGATGCCGC GGATCATCGA GTCCCTCACG
GGCACGTCCC TCGAGTCGAT GCTGGGGGTC ACCTCGTGA
 
Protein sequence
MTLSLSLGAL ESLMLVGVRM VAFLVVAPPF SHRGIPATVK VMLATGLALA VSPRVENLVP 
DSTGEYVVLL VGEAIIGAGL GFLVAVVFSA VQSAGALIDL MGGFSLAQGF DPMTQVNGAQ
FARLYQLTAV VILFASNGYQ MVIGGLVRTF DALPLGSTLD LARLGEALTS SLTGMFLATL
QIAGPLVVVL FLADVGLGLL TRVAPALNAF ALGFPLKILL TLSLASLTYL AMPRIIESLT
GTSLESMLGV TS