Gene Sked_29830 details

Gene Information

• Locus tag: Sked_29830
• ID: 8634617
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Sanguibacter keddieii DSM 10542
• Kingdom: Bacteria
• Replicon accession: NC_013521
• Strand: -
• Start bp: 3312060
• End bp: 3315572
• Gene Length: 3513 bp
• Protein Length: 1170 aa
• Translation table: 11
• GC content: 67%
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_003315719
• Protein GI: 269796264

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 0.896013
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGCTGCCT CGCGCACCCC TTCTGCTCCG TCCGCCGACG CAATCGCGAA CCGCACCGCA 
TCTCGGCGCG TCTCCTTCGC CAAGATTTTT GAGCCGCTCG AGGTCCCCGA CCTCCTCGGC 
CTCCAGACCG ACAGCTTCGA CTGGCTCCTG GGCAACGAGA AGTGGCGCGC GCGTGTCGCG 
GCAGCCATGA AGCTCGGCAC CCAGGACGTG CCGGAGACCT CCGGGCTGGA AGAGATCTTC 
GAAGAGATCT CCCCGATCGA GGACTTCGGC TCCTCGATGT CACTCTCGTT CTCCAACCAC 
CGCTTCGAGC CCCCGAAGCA CACGGCGGAG GAGTGCAAGG AGAAGGACTT CACCTACGCG 
GCGCCTCTGT TCGTCACCGC GGAGTTCTTC AACTACAACA CCGGCGAGAT CAAGAGCCAG 
ACGGTCTTCA TGGGTGACTT CCCCCTGATG ACCGAGCGCG GCACCTTCAT CATCAACGGC 
ACCGAGCGCG TCGTCGTCTC GCAGCTCGTC CGTTCGCCCG GCGTGTACTT CGAGCGCGCG 
GCCGACAAGA CCAGCGACAA GGACATCTTC TCCGCGAAGA TCATCCCGCA GCGTGGTGCC 
TGGCTCGAGT TCGAGATCGA CAAGCGCGAC GCCGTCGGCG TCCGCGTCGA CCGCAAGCGC 
AAGCAGTCGG TCACCGTCCT CCTCAAGGCC CTCGGCCTCA CGGAGTCGGA GATCCGCGAG 
GAGTTCGCGG CCTTCCCCGC GATCCTCGAC ACCCTCGAGA AGGACAACGT CACGACCGAG 
GAAGAGGCGC TCGTCGACCT CTACCGCAAG ATCCGTCCGG GCGAGCCGCC CACGGTCGAG 
GCCGGTCGCT CGCTCCTCGA GAACTTCTAC TTCAACTCCA AGCGCTACGA CCTCGCGAAG 
GTCGGCCGCT ACAAGGTGAA CAAGAAGCTC GGCATCGACG CGCCGCTCGC CGACTCGGTC 
CTGACCGTCA CCGACATCGT CAAGACGATC AAGTACCTCG CGGCCCTGCA CGCCGACGTC 
ACCGCGCTCG ACGGCGTCAA GAACGGCGAG GCCGTCGAGG TGCGCGTCGA GACCGACGAC 
ATCGACCACT TCGGCAACCG TCGTATCCGC GCCGTGGGCG AGCTCATCCA GAACCAGGTC 
CGCACCGGCC TGTCGCGGAT GGAGCGCGTC GTGCGCGAGC GCATGACGAC CCAGGACGTC 
GAGGCCATCG CCCCGCAGAC CCTGATCAAC ATCCGCCCCG TCGTGGCGTC GATCAAGGAG 
TTCTTCGGGA CGTCCCAGCT GTCGCAGTTC ATGGACCAGA ACAACCCGCT CGCCGGCCTG 
ACGCACAAGC GTCGTCTGTC CGCGCTGGGC CCGGGTGGTC TGTCCCGCGA CCGCGCCGGC 
ATGGAGGTCC GTGACGTCCA CCCGTCGCAC TACGGCCGCA TGTGCCCGAT CGAGACCCCT 
GAGGGCCCGA ACATCGGCCT CATCGGCTCG CTCGCGTCCT TCGGTCGCAT CAACCCCTTC 
GGCTTCATCG AGACGCCGTA CCGCAAGGTC GAGAACGGCA AGGTCTCCGA CGACGTCGTG 
TACCTCACGG CCGACGACGA GGACCGCTAC GTCATCGCCC AGGCGAACAC GGAGCTCAAC 
GAGGACGGCT CGTTCCGCCA GGAGCGCGTC CTGGTCCGCA CCAAGGGTGG CGAGACGGAC 
GACGTCCTCG GCTCCAACGT GGACTACATG GACGTCTCCC CGCGCCAGAT GGTGTCGGTC 
GCGACCGCCC TCATCCCGTT CCTCGAGCAC GACGACGCCA ACCGCGCGCT CATGGGCGCC 
AACATGCAGC GCCAGGCCGT GCCGCTGGTC CGCTCGGAGG CTCCCTTCGT CGGGACCGGC 
ATGGAGCGTC GTGCCGCGAT CGACGCCGGT GACGTCATCG TCGCCACCAA GCCCGGTGTG 
GTCACCGAGG TCTCCGCAGA CCTCATCGTC GTCGCCAACG ACGACGCGAC CACCACGAGC 
TACCGCGCCG CGAAGTTCCG CCGCTCGAAC CAGGGGACCT CCTACAACCA GCGCGTGCTG 
GTCGACGAGG GTGCCCGCGT CGAGGTCGGC TCGGTCCTCG CCGACGGCCC CGCGACGGAC 
GAGGGCGAGC TCGCGCTCGG CCGCAACCTG CTCGTCGCGT TCATGTCGTG GGAAGGCCAC 
AACTACGAGG ACGCGATCAT CCTCAGCCAG CGTCTGGTCC AGGACGACGT CCTCTCCTCG 
ATCCACATCG AGGAGCACGA GGTCGACGCC CGCGACACGA AGCTCGGCCC GGAGGAGATC 
ACCCGGGACA TCCCGAACGT CTCCGAGGAC GTCCTGGCCG ACCTCGACGA GCGCGGCATC 
ATCCGCATCG GCGCCGAGGT CAGCTCGGGC GACGTGCTCG TCGGCAAGGT CACGCCCAAG 
GGCGAGACCG AGCTCACCCC GGAGGAGCGC CTGCTGCGCG CCATCTTCGG CGAGAAGGCC 
CGCGAGGTCC GCGACACGTC CCTCAAGGTG CCCCACGGCG AGTCCGGCAC GGTCATCGAG 
GTCCGCACGT TCAACCGTGA GGACGGCGAC GAGCTGCCCG CCGGTGTCAA CGAGCTGGTC 
CGCGTGTACA TCGCCCAGCG ACGCAAGATC ACCGCGGGCG ACAAGCTCGC CGGCCGTCAC 
GGGAACAAGG GCGTCATCTC GACGATCCTC CCGGTCGAGG ACATGCCGTT CCTCGAGGAC 
GGCACGCCCG TCGACATCGT CCTCAACCCC ATGGGTGTCC CGGGACGAAT GAACGTCGGT 
CAGGTGCTCG AGGTCCACCT CGGGTGGATC GCGGCGCAGG GCTGGGACGT CGACCTCGCG 
ACGGAGGGCG ACCTCTCCTG GAAGGAGAAC GTCCCCGCGG TCGCGTCGAC GTCGAAGCCC 
CGCAACCCGG TCGCCACGCC CGTGTTCGAC GGTCTCCAGG AGAACGCCCT CTCGGGTCTG 
CTCCAGAGCA CCCTCCCGAA CCGCGACGGC GCACGCATGG TGCAGCCCGA CGGCAAGGCA 
CGCCTCTTCG ACGGCCGCTC CGGCGAGCCG TTCCCCGAGG CCGTGGCCGT CGGCTACATG 
TACATCTTGA AGCTCCACCA CCTGGTGGAC GACAAGATCC ACGCGCGCTC GACCGGTCCG 
TACTCGATGA TCACCCAGCA GCCGCTCGGC GGTAAGGCCC AGTTCGGTGG CCAGCGCTTC 
GGTGAGATGG AGGTCTGGGC CCTCGAGGCG TACGGAGCCG CGTACACCCT GCAGGAGCTC 
CTCACCATCA AGTCGGACGA CGTCCCGGGC CGTGTCAAGG TCTACGAGGC GATCGTCAAG 
GGCGAGAACA TCCCCGACTC GGGCATCCCG GAGTCCTTCA AGGTCCTCCT CAAGGAGATG 
CAGTCGCTGT GCCTGAACGT CGAGGTGCTC TCGAGCGACG GTGTCTCCAT CGAGATGCGC 
GAGTCCGACG ACGACGTGTA CCGCGCCGCT GAAGAGCTCG GTATCGACCT GTCGCGTCGC 
CCGAACGCAG CAGCGAGCAT CGACGAGATC TGA 

 

Protein sequence

MAASRTPSAP SADAIANRTA SRRVSFAKIF EPLEVPDLLG LQTDSFDWLL GNEKWRARVA 
AAMKLGTQDV PETSGLEEIF EEISPIEDFG SSMSLSFSNH RFEPPKHTAE ECKEKDFTYA 
APLFVTAEFF NYNTGEIKSQ TVFMGDFPLM TERGTFIING TERVVVSQLV RSPGVYFERA 
ADKTSDKDIF SAKIIPQRGA WLEFEIDKRD AVGVRVDRKR KQSVTVLLKA LGLTESEIRE 
EFAAFPAILD TLEKDNVTTE EEALVDLYRK IRPGEPPTVE AGRSLLENFY FNSKRYDLAK 
VGRYKVNKKL GIDAPLADSV LTVTDIVKTI KYLAALHADV TALDGVKNGE AVEVRVETDD 
IDHFGNRRIR AVGELIQNQV RTGLSRMERV VRERMTTQDV EAIAPQTLIN IRPVVASIKE 
FFGTSQLSQF MDQNNPLAGL THKRRLSALG PGGLSRDRAG MEVRDVHPSH YGRMCPIETP 
EGPNIGLIGS LASFGRINPF GFIETPYRKV ENGKVSDDVV YLTADDEDRY VIAQANTELN 
EDGSFRQERV LVRTKGGETD DVLGSNVDYM DVSPRQMVSV ATALIPFLEH DDANRALMGA 
NMQRQAVPLV RSEAPFVGTG MERRAAIDAG DVIVATKPGV VTEVSADLIV VANDDATTTS 
YRAAKFRRSN QGTSYNQRVL VDEGARVEVG SVLADGPATD EGELALGRNL LVAFMSWEGH 
NYEDAIILSQ RLVQDDVLSS IHIEEHEVDA RDTKLGPEEI TRDIPNVSED VLADLDERGI 
IRIGAEVSSG DVLVGKVTPK GETELTPEER LLRAIFGEKA REVRDTSLKV PHGESGTVIE 
VRTFNREDGD ELPAGVNELV RVYIAQRRKI TAGDKLAGRH GNKGVISTIL PVEDMPFLED 
GTPVDIVLNP MGVPGRMNVG QVLEVHLGWI AAQGWDVDLA TEGDLSWKEN VPAVASTSKP 
RNPVATPVFD GLQENALSGL LQSTLPNRDG ARMVQPDGKA RLFDGRSGEP FPEAVAVGYM 
YILKLHHLVD DKIHARSTGP YSMITQQPLG GKAQFGGQRF GEMEVWALEA YGAAYTLQEL 
LTIKSDDVPG RVKVYEAIVK GENIPDSGIP ESFKVLLKEM QSLCLNVEVL SSDGVSIEMR 
ESDDDVYRAA EELGIDLSRR PNAAASIDEI