| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_27780 |
|---|
| Symbol | |
|---|
| ID | 8634412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 3098192 |
|---|
| End bp | 3098803 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | conserved hypothetical protein TIGR00427 |
|---|
| Protein accession | YP_003315514 |
|---|
| Protein GI | 269796059 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.004251 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.739929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGACG CTCGTCTGTT CATCGAGGTC TTCATCACCC TGTTCGTCAT CATGGACCCC
CCGGGGACCG TGCCGATCTT CCTCGGCCTC ACCAGCGCCA TGACGCACAA GCAGCGGGCA
CGGGCCGCCC GCACCGCGAT CTTCGTCGCC GCCGGCGTGA TCCTCGCCTT CTCGATCTTC
GGCCAGCAGC TCCTGACCTA CATGCACATC TCCATCCCTG CCCTCCAGGC GTCGGGCGGT
GTGCTGCTGT TCCTCATCTC GATGGAGCTG CTCACCGGCA AGATGGAGGA GCCGCAGGCC
AGCTCGAAGA ACGTCAACGT GGCGCTCGTG CCCCTCGGCA CGCCGCTGCT CGCCGGGCCC
GGTGCCATCG TCGCGTCGAT GCTGTTCGTG CAGCGAGCCG ACGGCGACGC CCGCTCCCTC
GTGTCGATCT TCGTCGGCTT CGTCCTCGTG TGCGTGTGCC TGTGGGTCGC CATGCGCTTC
GCCAGCGTGG TGCACCGGAT CCTCGGCGAG GGCGGCACGC TCCTCGTGAC CCGCATCGCC
GGCCTGCTGC TCGCGGCCAT CGCGGTCCAG CTCATCGCCG ACGCCGTCAT CGCCTTCGTC
CAGACCGCGT AG
|
|---|
| Protein sequence | MFDARLFIEV FITLFVIMDP PGTVPIFLGL TSAMTHKQRA RAARTAIFVA AGVILAFSIF
GQQLLTYMHI SIPALQASGG VLLFLISMEL LTGKMEEPQA SSKNVNVALV PLGTPLLAGP
GAIVASMLFV QRADGDARSL VSIFVGFVLV CVCLWVAMRF ASVVHRILGE GGTLLVTRIA
GLLLAAIAVQ LIADAVIAFV QTA
|
|---|
| |