Gene Sked_23520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_23520 
Symbol 
ID8633987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp2619441 
End bp2620574 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content70% 
IMG OID 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_003315101 
Protein GI269795646 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0200205 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAG CACCTCCGCC CGTCCTCGCC CCGCGACGAC CCACCCGCAA GATCAAGGTG 
GGCAAGGTGG ACGTCGGCGG CGACGCCCCG GTGAGCGTGC AGTCCATGTG CACCACGCCG
ACCACCGACA TCAACGCGAC CCTCCAGCAG ATCGCGGAGC TGACGGCCTC GGGCTGCGAC
ATCGTGCGTG TCGCGGTGCC GAGCCAGGAC GACGCCCTCG CGCTCCCGGC GATCGCCAGG
AAGTCGCAGA TCCCCGTGAT CGCGGACATC CACTTCCAGC CCAAGTACGT CTACGCGGCG
ATCGACGCCG GCTGTGCCGC GGTGCGCGTG AACCCGGGCA ACATCCGCAA GTTCGACGAC
CAGGTCAAGC AGATCGCGAA CGCCGCCCGT GACGCGGGCG TCTCGATCCG TATCGGCGTC
AACGCCGGGT CGCTCGACCC GCGGATCATG GCCAAGTACG GCAAGGCGAC TCCCGAGGCG
CTCGTCGAGT CGGCCGTCTG GGAGGCGTCG CTCTTCGAGG AGCACGACTT CCACGACTTC
AAGATCTCGG TCAAGCACAA CGACCCCGTG GTCATGGTGC GCGCCTACGA GCTGCTCTCG
CAGGCCGGCG ACTGGCCGCT GCACCTCGGT GTCACCGAGG CAGGTCCGGC CTTCCAGGGC
ACCATCAAGT CCGCGACCGC CTTCGGCGCG CTGCTCTCGC AGGGCATCGG CGACACGATC
CGCGTCTCGC TGTCCGCCCC GCCGGTCGAG GAGGTCAAGG TCGGCATCCA GATCCTCCAG
TCGCTCAACC TCCGGCCCCG CAAGCTCGAG ATCGTCTCGT GCCCGTCGTG CGGGCGCGCC
CAGGTCGACG TGTACACGCT CGCCGAGAAG GTCACCGCCG GTCTCGAGGG CCTCGAGGTC
CCGCTCCGCG TGGCCGTCAT GGGCTGCGTC GTGAACGGCC CCGGCGAGGC TCGCGAGGCC
GACCTGGGCG TGGCCTCGGG CAACGGCAAG GGACAGATCT TCGTCAAGGG CGAGGTCGTC
AAGACCGTCC CCGAGGCGCT GATCGTCGAG ACGCTCATCG AAGAGGCCAT GCGCATCGCC
GAGACCATGG AGCGCCCCGC CGAGGGCGGC GCCCCGGTCG TCTCGGTCGG CTGA
 
Protein sequence
MPEAPPPVLA PRRPTRKIKV GKVDVGGDAP VSVQSMCTTP TTDINATLQQ IAELTASGCD 
IVRVAVPSQD DALALPAIAR KSQIPVIADI HFQPKYVYAA IDAGCAAVRV NPGNIRKFDD
QVKQIANAAR DAGVSIRIGV NAGSLDPRIM AKYGKATPEA LVESAVWEAS LFEEHDFHDF
KISVKHNDPV VMVRAYELLS QAGDWPLHLG VTEAGPAFQG TIKSATAFGA LLSQGIGDTI
RVSLSAPPVE EVKVGIQILQ SLNLRPRKLE IVSCPSCGRA QVDVYTLAEK VTAGLEGLEV
PLRVAVMGCV VNGPGEAREA DLGVASGNGK GQIFVKGEVV KTVPEALIVE TLIEEAMRIA
ETMERPAEGG APVVSVG