Gene Sked_20940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_20940 
Symbol 
ID8633729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp2336751 
End bp2337572 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content73% 
IMG OID 
Producthaloacid dehalogenase superfamily enzyme, subfamily IA 
Protein accessionYP_003314850 
Protein GI269795395 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.650807 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCACCT CACCTGATCT GAGCCCTGTC CCCGCGCCCG CAGAGTCCCC GCGCACGACC 
ATCACCTCGT CCGACGCCGC GCCGTCCGAG GTCGCGCCGC TCGACGCCGC GTCGCCCGGC
GCCCGGCCTG CCGGTCTGCC CGCCGCCGTC CTGTGGGACA TGGACGGCAC GCTCATCAAC
TCCGAGCCCT ACTGGATGGC CGCCGAGGGT GAGCTCACCC GCGAGCACGG CGTCCCATGG
ACGCACGAGG ACGGCCTCCA GCTCGTGGGA CGGGCCCTGG TCGACTCGGC CGCGATCATG
CAGCGCGCCG GCGTGCGGCT CGAGGTCCCC GAGATCATCG AGTACCTCAT CTCCCGTGTC
ATCGCACAGG TCGAGATCGA GGTCCCGTGG CAGGACGGCG CGGTCGAGAC CCTCGCGTCC
GTGCGGGCGC TCGGCGTGCC GTGCGCCCTG GTGACCATGT CCTACCGGTC CTTCGCCGAC
GCCTTCGTGG CGCAGGTCGC GCCGGGGACC TTCGACGTGA CGGTGACCGG CGACGAGGTG
GCGCAGGGCA AGCCGCACCC CGAGGCGTAC CTGCGCGCCG CCGAGATGCT CGGTGTCGCG
GTCGAGGACT GCGTCGTCGT CGAGGACTCG CCGTCCGGCA TCGCCTCGGG GCTCGCCTCG
GGTGCTGCCA CCGTCGGCAT CGAGGTCATG GTCCCCGTCG AGCCGCAGCC CGGCCTCAGC
CGCATCCGCT CGCTGCGCTC GCTCACGCCG GAGACCCTCA GCCGTCTCGT GGCCGGGGAG
GTCCTCGACG AGCTCGGCGC CCCGCAGGAC GCTCAGGTCT GA
 
Protein sequence
MPTSPDLSPV PAPAESPRTT ITSSDAAPSE VAPLDAASPG ARPAGLPAAV LWDMDGTLIN 
SEPYWMAAEG ELTREHGVPW THEDGLQLVG RALVDSAAIM QRAGVRLEVP EIIEYLISRV
IAQVEIEVPW QDGAVETLAS VRALGVPCAL VTMSYRSFAD AFVAQVAPGT FDVTVTGDEV
AQGKPHPEAY LRAAEMLGVA VEDCVVVEDS PSGIASGLAS GAATVGIEVM VPVEPQPGLS
RIRSLRSLTP ETLSRLVAGE VLDELGAPQD AQV