Gene Sked_18790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSked_18790 
Symbol 
ID8633514 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSanguibacter keddieii DSM 10542 
KingdomBacteria 
Replicon accessionNC_013521 
Strand
Start bp2083927 
End bp2085549 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content70% 
IMG OID 
ProductABC-type dipeptide transport system, periplasmic component 
Protein accessionYP_003314638 
Protein GI269795183 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00232176 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.206883 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACCTCA CGCGCACCCG GACCACGCCC CAGAGCACGA CGACGCGGAC CGCCTCCGCC 
GTCGCCCTGT CTGCCGCCCT GGCCGTCGCG CTCTGCTCGT GCTCCTCGTC CCCTGACACC
GCCGGGCCGA CCACCAGCCC CTCGACAGGC ACCTCGACCA CCGAGGCCGC CGGCGAGCCC
CAGCCGGGCG GCACCCTCGT CTTCGCCCGG ACGCAGTCGC CCACGTCGCT CGACCTGCAC
CGCGAGATCA CCGCCAACAA CGCCTTCGCG ATCGACAAGG TCTTCGAGCC GCTCCTGGCC
TTCGACGCCG AGGGCGAGAT CGAGCCGTGG CTCGCGAGCG AGTACTCGGC GAGCGACGAC
GGCCTCGTGT GGACCTTCAC CCTGCGCGAC GGCGTGACCT TCTCCGACGG CTCGCCGCTC
ACCCCGGCCG ACGTGGTGTT CTCCCTCGAG CGCCACCTCG AGATCGGTGG CCCCCTGCCC
CTCGGCGCGC CGATCACCTC GGTCGAGGCG CAGGGCGAGG ACACGGTCGT CATCACGCTC
AGCGCCCCGT ACACGCCCTT CGCCGCGGAG CTCGCCGGGT TCTCCAACGG GATCCTGCCC
GCAGACCTCG GCGGGGTCGA CGAGGCGACC TTCTTCAAGA ACCCCGTCGG CACGGGCCCC
TTCGTCGTGG ACGAGTGGAC CGAGGGCGGC GACATCTCGT TCACCGCGAA CGACGGCTAC
TGGCAGGACG GCAAGCCGTA CCTCGACGAG GTCGTCTACC GCCTCGTCCA GGACGACAAC
CAGCTGATCG CCCAGCTGCA GGCCGGACAG GTCGACGTCA TCGACTCCGT GTCGAGCGCC
AACGTCGCGA CCCTCCAGTC GAACACCTCG CTCGCCGTGA GCATCACCCC CGGGTGGCAG
GTCGAGGAGC TGTTCTTCAA CACCCTCGAC GAGCACTTCC AGGACCGCGA CGTCCGCCGC
GCCGTCTCCT ACGCCCTCGA CCGTGAGGGC ATCGTCCAGG CCACGAGCTT CGGCACCGCC
GAGGTCGCCG GCTCGGTGCT GCCGCCCTCC ATCCCCGGCT ACGACGGTGA CATCACCACC
CTCGACTACG ACGTCGACGC GGCCAAGGCC GCGATCGCCG ACTCCGCCTA CCCGGACGGC
TTCTCCACCA AGCTCCTCGT GGCCAGCGGC AACGACCTCC GCGCCCAGGA GGCGCAGATC
ATCCAGGCGC AGCTCGCCGA GATCGGGATC ACCGTCGAGA TCGAGTCGAT CGACCTCGCG
GCCTTCCGCG AGCGGTTCCG TGCCTTCGAC TACTCCTTCA TGCTCAACGG CGCCACGAGC
GACGCGGCCG ACCCCAACGG CATCGTCACC TTCCAGGCCG ACCCGGAGGG CGGCACCAAC
GGGTACTGGA CGCACTACGA GAACCCTGAG GTCACCGCGC TCATCACCGA GGGGCGCACC
CTGCCCGACG GTGACGAGCG CACCGAGGTG TTCTCGCAGA TCCAGCAGCT CATCGCCGAC
GACGCGCCGT TCATCCCGCT GTCGTACCCG TCGAACATCA AGGCCTCGGC CGCGACCGTG
CAGGGCCTGA CCGTCCTGCC CAACGGCAGC GTGCGCCTCC AGGACACCTG GCTCGAGCAG
TAG
 
Protein sequence
MNLTRTRTTP QSTTTRTASA VALSAALAVA LCSCSSSPDT AGPTTSPSTG TSTTEAAGEP 
QPGGTLVFAR TQSPTSLDLH REITANNAFA IDKVFEPLLA FDAEGEIEPW LASEYSASDD
GLVWTFTLRD GVTFSDGSPL TPADVVFSLE RHLEIGGPLP LGAPITSVEA QGEDTVVITL
SAPYTPFAAE LAGFSNGILP ADLGGVDEAT FFKNPVGTGP FVVDEWTEGG DISFTANDGY
WQDGKPYLDE VVYRLVQDDN QLIAQLQAGQ VDVIDSVSSA NVATLQSNTS LAVSITPGWQ
VEELFFNTLD EHFQDRDVRR AVSYALDREG IVQATSFGTA EVAGSVLPPS IPGYDGDITT
LDYDVDAAKA AIADSAYPDG FSTKLLVASG NDLRAQEAQI IQAQLAEIGI TVEIESIDLA
AFRERFRAFD YSFMLNGATS DAADPNGIVT FQADPEGGTN GYWTHYENPE VTALITEGRT
LPDGDERTEV FSQIQQLIAD DAPFIPLSYP SNIKASAATV QGLTVLPNGS VRLQDTWLEQ