Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sked_18790 |
Symbol | |
ID | 8633514 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sanguibacter keddieii DSM 10542 |
Kingdom | Bacteria |
Replicon accession | NC_013521 |
Strand | - |
Start bp | 2083927 |
End bp | 2085549 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | |
Product | ABC-type dipeptide transport system, periplasmic component |
Protein accession | YP_003314638 |
Protein GI | 269795183 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.00232176 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.206883 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCTCA CGCGCACCCG GACCACGCCC CAGAGCACGA CGACGCGGAC CGCCTCCGCC GTCGCCCTGT CTGCCGCCCT GGCCGTCGCG CTCTGCTCGT GCTCCTCGTC CCCTGACACC GCCGGGCCGA CCACCAGCCC CTCGACAGGC ACCTCGACCA CCGAGGCCGC CGGCGAGCCC CAGCCGGGCG GCACCCTCGT CTTCGCCCGG ACGCAGTCGC CCACGTCGCT CGACCTGCAC CGCGAGATCA CCGCCAACAA CGCCTTCGCG ATCGACAAGG TCTTCGAGCC GCTCCTGGCC TTCGACGCCG AGGGCGAGAT CGAGCCGTGG CTCGCGAGCG AGTACTCGGC GAGCGACGAC GGCCTCGTGT GGACCTTCAC CCTGCGCGAC GGCGTGACCT TCTCCGACGG CTCGCCGCTC ACCCCGGCCG ACGTGGTGTT CTCCCTCGAG CGCCACCTCG AGATCGGTGG CCCCCTGCCC CTCGGCGCGC CGATCACCTC GGTCGAGGCG CAGGGCGAGG ACACGGTCGT CATCACGCTC AGCGCCCCGT ACACGCCCTT CGCCGCGGAG CTCGCCGGGT TCTCCAACGG GATCCTGCCC GCAGACCTCG GCGGGGTCGA CGAGGCGACC TTCTTCAAGA ACCCCGTCGG CACGGGCCCC TTCGTCGTGG ACGAGTGGAC CGAGGGCGGC GACATCTCGT TCACCGCGAA CGACGGCTAC TGGCAGGACG GCAAGCCGTA CCTCGACGAG GTCGTCTACC GCCTCGTCCA GGACGACAAC CAGCTGATCG CCCAGCTGCA GGCCGGACAG GTCGACGTCA TCGACTCCGT GTCGAGCGCC AACGTCGCGA CCCTCCAGTC GAACACCTCG CTCGCCGTGA GCATCACCCC CGGGTGGCAG GTCGAGGAGC TGTTCTTCAA CACCCTCGAC GAGCACTTCC AGGACCGCGA CGTCCGCCGC GCCGTCTCCT ACGCCCTCGA CCGTGAGGGC ATCGTCCAGG CCACGAGCTT CGGCACCGCC GAGGTCGCCG GCTCGGTGCT GCCGCCCTCC ATCCCCGGCT ACGACGGTGA CATCACCACC CTCGACTACG ACGTCGACGC GGCCAAGGCC GCGATCGCCG ACTCCGCCTA CCCGGACGGC TTCTCCACCA AGCTCCTCGT GGCCAGCGGC AACGACCTCC GCGCCCAGGA GGCGCAGATC ATCCAGGCGC AGCTCGCCGA GATCGGGATC ACCGTCGAGA TCGAGTCGAT CGACCTCGCG GCCTTCCGCG AGCGGTTCCG TGCCTTCGAC TACTCCTTCA TGCTCAACGG CGCCACGAGC GACGCGGCCG ACCCCAACGG CATCGTCACC TTCCAGGCCG ACCCGGAGGG CGGCACCAAC GGGTACTGGA CGCACTACGA GAACCCTGAG GTCACCGCGC TCATCACCGA GGGGCGCACC CTGCCCGACG GTGACGAGCG CACCGAGGTG TTCTCGCAGA TCCAGCAGCT CATCGCCGAC GACGCGCCGT TCATCCCGCT GTCGTACCCG TCGAACATCA AGGCCTCGGC CGCGACCGTG CAGGGCCTGA CCGTCCTGCC CAACGGCAGC GTGCGCCTCC AGGACACCTG GCTCGAGCAG TAG
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Protein sequence | MNLTRTRTTP QSTTTRTASA VALSAALAVA LCSCSSSPDT AGPTTSPSTG TSTTEAAGEP QPGGTLVFAR TQSPTSLDLH REITANNAFA IDKVFEPLLA FDAEGEIEPW LASEYSASDD GLVWTFTLRD GVTFSDGSPL TPADVVFSLE RHLEIGGPLP LGAPITSVEA QGEDTVVITL SAPYTPFAAE LAGFSNGILP ADLGGVDEAT FFKNPVGTGP FVVDEWTEGG DISFTANDGY WQDGKPYLDE VVYRLVQDDN QLIAQLQAGQ VDVIDSVSSA NVATLQSNTS LAVSITPGWQ VEELFFNTLD EHFQDRDVRR AVSYALDREG IVQATSFGTA EVAGSVLPPS IPGYDGDITT LDYDVDAAKA AIADSAYPDG FSTKLLVASG NDLRAQEAQI IQAQLAEIGI TVEIESIDLA AFRERFRAFD YSFMLNGATS DAADPNGIVT FQADPEGGTN GYWTHYENPE VTALITEGRT LPDGDERTEV FSQIQQLIAD DAPFIPLSYP SNIKASAATV QGLTVLPNGS VRLQDTWLEQ
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