| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_11390 |
|---|
| Symbol | |
|---|
| ID | 8632775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 1318648 |
|---|
| End bp | 1322445 |
|---|
| Gene Length | 3798 bp |
|---|
| Protein Length | 1265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | |
|---|
| Product | ribonuclease, Rne/Rng family |
|---|
| Protein accession | YP_003313917 |
|---|
| Protein GI | 269794462 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.320924 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00951871 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTCG ACCCCACGAA CACGACCGAA CCGACCGACG CGACAGCGAA GAAGCCCGCG
CGTCGCCGCG TGACCCGCCC CGCCGCCGCC CCTGCGGCCG AGGCCGGAGA CAGCACCAAG
GACGCCACGA GCAGCGAGGC GCCCCGCAGC ACCTCGACGA CGAGCGCCCC GGCTGCCGAG
ACCGCCGCGC CGGCCCCCAA GACCCGCAGC CGACGTGCCA CGTCCGCGAA GAAGACGGTC
GAGACCTCCA CGGCTCCGGC CGCCGAGGCT GCAGCCGCAG AGCCCGCCGC GGCCCCGGCG
GCGGCCCAGA GCGCCGCACC GACCGAGGCT GCGACCTCGA CCGAGGCCGC TGCACCGGCG
AAGGCCCCGC GCCGTTCGCG CCGGGTCACC AAGACCACCG AGCAGCTCGA CGTGTTCGCC
GAGCTCTCCG GCCCGACGAG CGCACCCGCT GCCGCTGCGA GCACCGCGCC GGCCGCCGCG
GAGACCGCTC CCGCTGCCGT CGACACCACG GCCGCCGTCG ACACCCCGGC CGCCGCCGAG
ACGACGGCGC CGACCGAGGA CGCCGCACCC CGTCGTCGCA CCCGGGCAGC GACACGCAAG
GCCTCGGCCC CTGCGTCCGC CGCCGCCCCG GCGTCTCAGG AGACCGAGCC GACCGCCGGC
ACCACGGCCC CGGCACCTGT GTCCGACGCC CCGGCCGAGG CGCCTGCCCG TGCACCGCGG
CGCTCGCGCT CGCGTGCGGC GGCCCCGGCC ACGACGCCGA CCCACGAGGA CGAGGTCGCC
AGCCTCGACG TCGTGGCCTC GATCGAGGCC CTCGCCACCG AGCCCGCGTC GAAGCCGGCC
CGTCGCAGCC GCAAGGCGGC CTCCGCGCCC GCGACCGCCC TCTTCGAGGA CGCCGAGGTC
TCCCGCCCCC GTCGTGCGGC GACCCGCGCC GCGTCGGCCC CTGCTGCGGT CGAGGCCGAG
CAGACGGCCC CCGCCGCCGA GGCAGGCTCG ACGAGCACCT CGACCAGCGA CGTGCCTGCC
GTGACCGCCA CGGAGCCGCA GGCGGACGCG CCGCGCAAGA CGCGCAGCCG TCGTGCCCGC
AGCGCCGAGC CCGAGTCCCG TCAGGCACCG GCCGAGCCCG CCTCCGCCGA GCGCGACCAC
CAGGTCGCCG AGCCTGAGGC CGAGACGGTC GCCGAGGCCC CTGCCCGTCG CACCACTGCT
CTGCTCTTCC AGGCACCCGA CCCCGACGCC GGGCGTCCCC GACGTCGTCG GGCCCAGTCG
CCTGCCGGCC CGCCCAAGGC GATCTCCGAG GCTGCTGCCG CCGTCGAGGT CGAGGAGGAC
GAGGACGAGG CCACCACCGA CGAGGCGCTC GTCGCCGCGC AGGACCAGGA CCTCGCCGGG
TCCGACGAGG TCACGACGGA CGAGTCCTCC GACGCTGACG ACACGGACGA CGCTGACGAC
TCCGACGGCT CTGACGATGC GGACACCGAC GGCTCGGGCG CGCCCCGACG TCGCCGCCGC
CGTGGCGGTC GTGGACGCCG CAACCGCGGT GGCAACGACC AGCGTGACGA GGACGACCGC
GACTCCCGTC GGGACGACGA CGCCGAGGGC GACGACGACT CCGACGACAG CACCGACGAC
TCGGGCGACA CGCACACCGG CTCCTCGGAC GAGGGCTCGC GCGGCGAGGG CGGGCGCTCG
CGCTCGCGCC GCCGGTCCCG CGGTGCTGCC CAGCAGCAGA CGTCCGACTC CGACGACGAC
GAGCCCGAGG GCTCGGAGGA CTCCGACGAC CACGACTCCG ACGACTCTGA CGACTCGGCG
TCCAGCCGTC GTCGTCGTCG CCGCCGTCGT GGGTCGCGCG GGTCGGACAG CGACTCGGCG
CCCAGCAGCC CCGCGGCGGG GCGCAGCCAG GGTGGCTCGA GCCGTTCCGG CCGGACCGGC
TCGGACGAGG TCACCGCGCT CAAGGGCTCG ACGCGTCTCG AGGCCAAGCG CCAGCGCCGC
CGCGAAGGAC GCGACGCCGG TCGTCGCCGC TCGATCATCA CCGAGGCGGA GTTCCTCGCG
CGTCGCGAGT CCGTCGAGCG CTCGATGATC GTCCGCGAGC GGAACGGTCG CACCCAGATC
GCGGTGCTCG AGGACGGCGT GCTCGTCGAG CACTACGTGT CGCAGCAGTC GCAGGCCTCG
ATGGCCGGCA ACGTCTACCT GGGCCGTGTC CAGAACGTCC TGCCCAGCAT GGAGGCCGCG
TTCATCGACG TCGGCAAGGG CCGCAACGCC GTCCTCTACG CCGGCGAGGT CAACTGGGAC
GCCGCAGGCA TGGAGGGGCA GCCCCGACGC ATCGAGCAGG CGCTCAAGTC TGGCGACTCG
GTCCTGGTGC AGGTCACCAA GGACCCGATC GGCCAGAAGG GCGCTCGCCT GACCTCGCAG
GTCACGCTCG CCGGCCGCTA CCTCGTCTAC GTGCCCGGTG GTGGCATGAC GGGGATCTCG
CGCAAGCTCC CCGACACCGA GCGTGCGCGC CTCAAGAAGA TCCTCCGCGA GGTCGTCCCC
GAGACCGCGG GCGTCATCGT GCGCACCGCC GCCGAGGGGG CCAGCGAGGA GGAGCTCCGC
GCTGACATCG CCCGGCTCCA GGGCCAGTGG GAGGCCATCG AGAAGAAGTC GAAGACCGCG
TCCGCGCCGG CGCTCCTCCA GGGGGAGCCG GACCTCGCCA TCCGAGTGGT CCGCGACATC
TTCAACGACG ACTTCACGTC GCTGACGGTC TCCGGCGACG GTGCCTGGTC CGAGATCTCG
GAGTACGTCA ACGCCCTCGC CCCGGACCTC GCCGAGCGCG TCAAGCGCTG GACGAGCGAT
AAGGATGTCT TCGCGGAGGC CCGGATCGAC GAGCAGCTCG CCAAGGGCAT GGACCGCAAG
GTCTGGCTGC CCTCGGGTGG CTCGCTCGTC ATCGACCGGA CCGAGGCCAT GACGGTCGTC
GACGTCAACA CCGGCAAGTT CACCGGCTCT GGCGGGACGC TCGAGGAGAC GGTCACGCGC
AACAACCTCG AGGCCGCCGA GGAGATCGTC CGCCAGCTCC GCCTGCGCGA CATCGGCGGG
ATCATCGTCG TGGACTTCAT CGACATGGTC CTCGAGTCCA ACCGCGACCT CGTCCTGCGC
CGCATGGTCG AGTGCCTCGG CCGCGACCGC ACCAAGCACC AGGTCGCCGA GGTCACCTCG
CTCGGCCTCG TCCAGATGAC CCGCAAGCGC GTGGGCCAGG GTCTCGTCGA GGCCTTCAGC
GAGACCTGCG ACCACTGCAA CGGCCGCGGG TTCATCGTCC ACGACGAGCC GAACGAGAAG
CACTTCCAGG GTGGCTCGCA GCCCTCGGGC GCCCAGGTCG CCGCGCAGTC CTCGGCCCCG
GCCGACGGCG GCGACAGCAA GCGCTCGCGC CGCAAGCGCG GGGGAGCCAA GGAGACCGAG
AGCACCACGG TCCCCGTGCT CCCCGAGGCC CGTGAGGCCG TCAAGGCGAC CCTGGCGACC
ATCGCCGCGG CCGCGGCGCA CGCCCACGAG CACGACGACG AGCACGGCCA CGCGGCCGGG
TCCGCCGAGC AGGGCGAGCT CGCGGTCGTC GAGGTGACGG TCGTCGAGAC CGAGCAGGTC
GTGGACGAGG TCGAGCAGGC CGAGCCGGCC GACGACGTCA CGGTCGGCGA GCAGGCGACC
GAGACCGAGA CCGGGGCAGA GGACTCCGAC GAGCAGGAGC CGAAGCGGCC CGTGCTCGAC
GTGGTCGCAG AGCTCCGGTC GGTCCGCCGA CCGGTGTCCG GCCGCGGTCG TGGCGCCAAG
AAGGCCGACC AGGACTGA
|
|---|
| Protein sequence | MTLDPTNTTE PTDATAKKPA RRRVTRPAAA PAAEAGDSTK DATSSEAPRS TSTTSAPAAE
TAAPAPKTRS RRATSAKKTV ETSTAPAAEA AAAEPAAAPA AAQSAAPTEA ATSTEAAAPA
KAPRRSRRVT KTTEQLDVFA ELSGPTSAPA AAASTAPAAA ETAPAAVDTT AAVDTPAAAE
TTAPTEDAAP RRRTRAATRK ASAPASAAAP ASQETEPTAG TTAPAPVSDA PAEAPARAPR
RSRSRAAAPA TTPTHEDEVA SLDVVASIEA LATEPASKPA RRSRKAASAP ATALFEDAEV
SRPRRAATRA ASAPAAVEAE QTAPAAEAGS TSTSTSDVPA VTATEPQADA PRKTRSRRAR
SAEPESRQAP AEPASAERDH QVAEPEAETV AEAPARRTTA LLFQAPDPDA GRPRRRRAQS
PAGPPKAISE AAAAVEVEED EDEATTDEAL VAAQDQDLAG SDEVTTDESS DADDTDDADD
SDGSDDADTD GSGAPRRRRR RGGRGRRNRG GNDQRDEDDR DSRRDDDAEG DDDSDDSTDD
SGDTHTGSSD EGSRGEGGRS RSRRRSRGAA QQQTSDSDDD EPEGSEDSDD HDSDDSDDSA
SSRRRRRRRR GSRGSDSDSA PSSPAAGRSQ GGSSRSGRTG SDEVTALKGS TRLEAKRQRR
REGRDAGRRR SIITEAEFLA RRESVERSMI VRERNGRTQI AVLEDGVLVE HYVSQQSQAS
MAGNVYLGRV QNVLPSMEAA FIDVGKGRNA VLYAGEVNWD AAGMEGQPRR IEQALKSGDS
VLVQVTKDPI GQKGARLTSQ VTLAGRYLVY VPGGGMTGIS RKLPDTERAR LKKILREVVP
ETAGVIVRTA AEGASEEELR ADIARLQGQW EAIEKKSKTA SAPALLQGEP DLAIRVVRDI
FNDDFTSLTV SGDGAWSEIS EYVNALAPDL AERVKRWTSD KDVFAEARID EQLAKGMDRK
VWLPSGGSLV IDRTEAMTVV DVNTGKFTGS GGTLEETVTR NNLEAAEEIV RQLRLRDIGG
IIVVDFIDMV LESNRDLVLR RMVECLGRDR TKHQVAEVTS LGLVQMTRKR VGQGLVEAFS
ETCDHCNGRG FIVHDEPNEK HFQGGSQPSG AQVAAQSSAP ADGGDSKRSR RKRGGAKETE
STTVPVLPEA REAVKATLAT IAAAAAHAHE HDDEHGHAAG SAEQGELAVV EVTVVETEQV
VDEVEQAEPA DDVTVGEQAT ETETGAEDSD EQEPKRPVLD VVAELRSVRR PVSGRGRGAK
KADQD
|
|---|
| |