| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_09020 |
|---|
| Symbol | |
|---|
| ID | 8632538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 1031097 |
|---|
| End bp | 1031711 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | dTDP-4-dehydrorhamnose 3,5-epimerase |
|---|
| Protein accession | YP_003313686 |
|---|
| Protein GI | 269794231 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00951816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.326272 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGTTCC GCCAGCTGTC CGTGCCCGGC GCGTGGGAGA TCACCCCGAA GCAGTTCGGT
GACCCGCGAG GCGTGTTCCT CGAGTGGTTC AAGGGTGCGC CGTTCGCCGA GGAGGCGGGC
CACGCCCTGG CGCTCGCGCA GGCGAACCTC TCGGTCTCGG CCGCCGGCGT GCTGCGCGGT
ATCCACTTCG CCGACGTCCC GCCCGGTCAG GCCAAGTACG TGACCTGCGC CCGTGGTGCG
GTCCTCGACG TGGTCGTCGA CATCCGCGTG GGCTCCCCCA CCTACGGCCA GTGGGACTCG
GTGCTGCTCG ACGACGTCGA CCGCCGCGCC ATCTACCTGT CGGAAGGCCT GGGCCACGCG
TTCCTGTCCC TCGAGGACGA CTCGACCGTC CTGTACCTGT GCTCGGCGCC CTACGCCCCG
GGCCGCGAGC ACGGGATCCA CCCGCTCGAC CCCGAGATCG GCATCGACTG GCCGACGACC
GCCCGCGACG GCTCGCCTCT GCAGTACGAG CTGTCTGAGA AGGACTCCGT CGCCCCCACC
CTCGCCGAGG CCCTTCAGAG CGGCCTCCTG CCGTCGGCCA ACGAGGTCGC AGAGTTCGTC
GCTGGCCTGC GCTGA
|
|---|
| Protein sequence | MEFRQLSVPG AWEITPKQFG DPRGVFLEWF KGAPFAEEAG HALALAQANL SVSAAGVLRG
IHFADVPPGQ AKYVTCARGA VLDVVVDIRV GSPTYGQWDS VLLDDVDRRA IYLSEGLGHA
FLSLEDDSTV LYLCSAPYAP GREHGIHPLD PEIGIDWPTT ARDGSPLQYE LSEKDSVAPT
LAEALQSGLL PSANEVAEFV AGLR
|
|---|
| |