| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_05300 |
|---|
| Symbol | |
|---|
| ID | 8632167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 584281 |
|---|
| End bp | 585309 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | |
|---|
| Product | RNA polymerase sigma factor RpoD, C-terminal domain/RNA polymerase sigma factor, sigma-70 family |
|---|
| Protein accession | YP_003313324 |
|---|
| Protein GI | 269793869 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG CACTCTCCGC ACGGACACCG ACCTCACCGA CCGCCTCGCA GACGGACGAC
AGCTTCGTCC TGTCGACCGA CGAGGAGGAC GCTCCGGCGC CCACAGTACT CGCGGCCGGC
GCGACGGCCG ACCCGGTCAA GGACTACCTC AAGATCATCG GGCGCGTCCC CCTGCTCAAC
GCCGAGCAGG AGATCGAGAT CGCCATGCGC ATCGAGGCGG GCATGCTCGC CGCGCACTAC
CTCGAGTCCG GGGAGTACCC CAAGGGCGCC ACCAAGCGTG AGCTCGAGGT CATCACCGCC
GACGGCGTCC GCGCCAAGAG CCACCTCGTC GAGGCCAACC TGCGCCTCGT GGTGTCGATC
GCCAAGAAGT ACACCGGCCG CGGCCTGCTG TTCCTCGACC TCATCCAGGA GGGCAACACC
GGCCTCATCC GCGCGGTCGA GAAGTTCGAC TACGCCAAGG GCTTCAAGTT CTCGACCTAC
GCCACGTGGT GGATCCGCCA GGCCATCACC CGCGGCATGG CCGACCAGGC CCGCACCATC
CGTATCCCGG TGCACATGGT CGAGGTCATC AACAAGGTGT CCCGCGCTCA GCGCCAGATG
CTCCAGGACC TCGGCCGCGA GCCGACGCCC GAGGAGCTCG CGCTCGAGCT CGACATGACG
CCCGAGAAGG TCCTCGAGGT GCAGAAGCAC GGTCGTGAGC CCATCTCGCT CCACACCCCC
CTCGGTGAGG AGGGCGGCAG CGAGTTCGGC GACCTCATCG AGGACACCGA GGCCGTGGTC
CCCGCGGACG CCGTGAACTT CAGCTTCCTG CAGCAGCAGA TCCACGGGAT CCTCGACACC
CTGTCCGAGC GCGAGGCCGG CGTCATCACC ATGCGCTACG GCCTCACGGA CGGTCTGCCC
AAGACCCTCG ACCAGATCGG GCACGTGTAC GGCGTGACGC GCGAGCGCAT CCGCCAGATC
GAGTCCAAGA CGATGTCCAA GCTGCGCCAC CCCAGCCGCT CCCAGGTGCT GCGCGACTAC
CTCGACTGA
|
|---|
| Protein sequence | MTTALSARTP TSPTASQTDD SFVLSTDEED APAPTVLAAG ATADPVKDYL KIIGRVPLLN
AEQEIEIAMR IEAGMLAAHY LESGEYPKGA TKRELEVITA DGVRAKSHLV EANLRLVVSI
AKKYTGRGLL FLDLIQEGNT GLIRAVEKFD YAKGFKFSTY ATWWIRQAIT RGMADQARTI
RIPVHMVEVI NKVSRAQRQM LQDLGREPTP EELALELDMT PEKVLEVQKH GREPISLHTP
LGEEGGSEFG DLIEDTEAVV PADAVNFSFL QQQIHGILDT LSEREAGVIT MRYGLTDGLP
KTLDQIGHVY GVTRERIRQI ESKTMSKLRH PSRSQVLRDY LD
|
|---|
| |