Gene Rmar_2754 details

Gene Information

• Locus tag: Rmar_2754
• ID: 8569423
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: +
• Start bp: 3188944
• End bp: 3192282
• Gene Length: 3339 bp
• Protein Length: 1112 aa
• Translation table: 11
• GC content: 67%
• Product: transcription-repair coupling factor
• Protein accession: YP_003292012
• Protein GI: 268318293

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.502691
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAACTGA CCGATCTGCA CCACCGCCTG GCATCGGCGG CCTTCTTCGA GCCGCTGCAC 
GCGCACCTGG AATCCCTGAC CCCTTCGACC CGCCTGCACC TGCGCGGGCT GGCGGGCTCG 
CTGCCCGCCT TCGTGCTCTA CGAGCTGAGC CGACACCTCC GCCGTCCTGT CCTCTGTCTG 
ACGCCCGACG AAGAACAGGC CGCCTATCTC TTCAGCGACC TGGAACAGCT GCTGGGCGTC 
TCGGATCGCC TGCTGCGCTT TCCGGCCACC GGCCAGAAGC CCTACGACCC GGAGCAGATC 
CCCGACTCCG CTCCGCTTAT CGAACGCACC GACGTGCTGC GCCGCCTGGC CGAAGGCTTC 
GACGGACTGC TCCTCGCCAG TGCCGAGGCC ATCGCCGAAC GCGTTCCCCC ACCCGACCGG 
GTCCGCCAGG AAACGCTCGT GCTCAGCCCG GGCATGGTGA TCGATCCTGC CCAACTTCTG 
GCCCACCTCA TCGCCCGCGG CTTCGAGCGC GTGGAGTTCG TCGAGGCCCC CGGCGAGGTG 
GCCCTCCGCG GCGGCATCCT CGACGTGTAC CCCTTCACCG GCACGCACCC GATCCGCGTC 
GAATTCTTCG GGGACGAGAT CGACACGATC CGGGAATTCG ACCCGCGCAC GCAACGCTCC 
ATCAGCCGCC TGACCTCGGC CCAGATCGTC CCGAACCTGT CGGCGGCCGA CTCCGAGGAG 
GCGGCCCACA CGCTCTTCGA GCACCTGCCC GATCATGCGC TGCTCGTCCT CTTCGAGGAG 
GGCGCCCTCT TCGACGCCGT GCAGGCCCGC TTTGCCGAGG CCGAACAGGC CTACGCCCGC 
CTGAACGCGC CCGACGAACA GCCCCGCCCG GAAGCCCGCT ACCTGCCCCC GGCCGAACTG 
GCCGCCCACC TGAACCGCTA CCCGGCCCTG CTCTTCGGTA CGCTGGCCGA AGCCGAACGG 
ACGCTGACCT GGGACACCCA CCCGCAGCCC GCCTTCCACG GCAACCTGAA CCTGCTGCGC 
GAGCGCCTGC ACGAAAACGC TCGGCGCGGC TGGGAAACCG TCATCCTGTG CGACAGCCGG 
AGCCAGGAGG CCCGCCTGCA CGACCTGCTC CAGGAAGAAA TCGAAGCGGG CGGTGTGCGC 
CTGCTCGTCG AATCGCTCCA CGAAGGCTTC GAGGTGCCCG AAGCCCGTCT GGCCGTCTAC 
ACGGACCACC AGATCTTCGG CCGCTACCAC CGCCCCACCA CCCGGCGTCG GCGCCACCTG 
CTGGGCGGCC TGTCGCTCCG CGCCCTGCAG AACCTCCAGC CCGGCGACTA CGTGGTGCAC 
GTCGATTTCG GCATCGGCCA GTTCGCCGGC CTGCAGCGCA TCACCATACG GGGCAAGCAG 
CAGGAGGTCG TCCGCCTCCA CTACGCCGAC GGCGACGTGC TCTACGTGAG CGTCAACGCG 
CTCCACAAGC TGCACCGCTA CACGGGTCGA GAGGGCCATC AGCCCCGCCT GACCAAGCTG 
GGCTCGGGCC AGTGGGAAAA GGTCAAGGCC CGCACGAAAA AACGCGTCAA GGACATCGCG 
CGCGACCTGA TCCGACTCTA CGCGAAACGC AAGGCCTCCC GCGGCTTCGC CTTCTCGCCC 
GACACGGTCT GGCAACGCGA AATGGAAGCG GCCTTCGAGT ACGAGGATAC GCCCGACCAG 
GCCGCCGCGG CCGAGGCCGT CAAGCGCGAC ATGGAGCAGC CCGTGCCCAT GGACCGGCTC 
GTGTGCGGCG ACGTGGGCTT CGGCAAGACC GAGATCGCCA TCCGCGCCGC CTTCAAAGCC 
GTACAGGACG GCAAGCAGGT GGCCGTGCTC GTGCCCACCA CGATCCTGGC CGACCAGCAC 
TACGAGACGT TCACGCGTCG GCTGGCCCCC TACCCGGTCC GCATCGAAGT GCTTTCGCGC 
TTCCGCTCGC CCGCCCGGCA ACGGGCCGTC CTGCGCGATC TGGCCGCCGG CAAGGTGGAC 
ATCATCATCG GCACGCACCG CCTGCTCTCG AAAGACGTGC AGTTCAAAGA CCTGGGCCTG 
CTCATCATCG ACGAAGAGCA GCGCTTCGGG GTGGCCGCCA AAGAGCGCCT GCGCCAGCTC 
CGCGTCGAGG TGGACACGCT CACGCTGACG GCCACGCCCA TCCCCCGCAC GCTCCAGTTT 
GCCCTGATGG GCGCCCGCGA TCTGTCGATC ATCTCCACGC CGCCGCCCAA CCGCCAGCCC 
ATCGTCACCG AGATCCATAC GTTCGACGAA ACGCTCATCC GCGACGCCAT CCGCTACGAG 
ATCAGCCGCG GCGGTCAGGT CTTCTTCATC CACAACCGCG TGCAGTCCAT CTACGAGATG 
GCCGCCCGCC TGCAGGCCAT CGTACCGGAC GTGCGCATCG CCGTGGCACA CGGTCAGATG 
AAGCCCCGCG AGCTGGAGCG CGTCATGCAC GACTTCATGG CGCGCAAGTA CGACGTGCTC 
GTCTCGACGA ACATCATCGA AAGCGGCCTG GACATCCCCA ACGCGAACAC GATCATCATC 
AACCACGCCG AGCAGTTCGG ACTGGCCGAC CTGCACCAGC TCCGCGGCCG CGTCGGACGC 
TCCGACCGCA AGGCCTTCTG CTACCTGCTC GTGCCCTCCA TTCACGGGCT CACACGCGAG 
GCGCGCCAGC GCCTGCAGGC CATCGAGGAA TTCAGCGAGC TGGGGAGCGG CTTTTCCATC 
GCGATGCGCG ACCTGGACAT CCGCGGCGCG GGCAACCTGC TGGGCGCCGA GCAGAGCGGC 
TTCATCGAAG AGATCGGCTT TGAAACCTAT CAGCAGATTC TCGACGAGGC GATCCGCGAG 
CTGCGCGAGG AGGAATTTGC GGACGTGCTG GGCGCCCCGC CTCCGAAGCC GCCCGAAACG 
AGCGTGGACG TCGAGGCCGA TGCGTTCATC CCGGAAACCT ACGTCAGCAG CAACGTGGAG 
CGGCTCAACC TGTACCGCCG CCTGAGCGAG GCGACCGACG AAGCGGCCAT CGAAGCCTTC 
CGCGAGGAGC TGGCCGACCG GTTCGGGCCG GTTCCGCCCG AAGTGGACAA CCTGCTCTGG 
GCCGCCCGCC TCAAACTGCT GGGCCAGGCG CTGCGCCTGC CGAAGGTGCT CTTCAAAAAT 
CGGCGGCTCT TTCTGGAATT TCCGCTCCAG GACGAAGACC CGCACTTCTA CGCGCACCAT 
TTCATGCCGC TACTGGAACG GCTGAGCCAG CTCGACCGCC GCTACGTGCT GAAGGACCAG 
AACAGAAAGC TGCGGGCCAT CGTGCAGGAC GTGCCCGATC TGGAAACGGC CTATCAGGTG 
CTTCGCCAGC TTCAGCCCGC CGAAGTGCCG GTCTCCTGA 

 

Protein sequence

MKLTDLHHRL ASAAFFEPLH AHLESLTPST RLHLRGLAGS LPAFVLYELS RHLRRPVLCL 
TPDEEQAAYL FSDLEQLLGV SDRLLRFPAT GQKPYDPEQI PDSAPLIERT DVLRRLAEGF 
DGLLLASAEA IAERVPPPDR VRQETLVLSP GMVIDPAQLL AHLIARGFER VEFVEAPGEV 
ALRGGILDVY PFTGTHPIRV EFFGDEIDTI REFDPRTQRS ISRLTSAQIV PNLSAADSEE 
AAHTLFEHLP DHALLVLFEE GALFDAVQAR FAEAEQAYAR LNAPDEQPRP EARYLPPAEL 
AAHLNRYPAL LFGTLAEAER TLTWDTHPQP AFHGNLNLLR ERLHENARRG WETVILCDSR 
SQEARLHDLL QEEIEAGGVR LLVESLHEGF EVPEARLAVY TDHQIFGRYH RPTTRRRRHL 
LGGLSLRALQ NLQPGDYVVH VDFGIGQFAG LQRITIRGKQ QEVVRLHYAD GDVLYVSVNA 
LHKLHRYTGR EGHQPRLTKL GSGQWEKVKA RTKKRVKDIA RDLIRLYAKR KASRGFAFSP 
DTVWQREMEA AFEYEDTPDQ AAAAEAVKRD MEQPVPMDRL VCGDVGFGKT EIAIRAAFKA 
VQDGKQVAVL VPTTILADQH YETFTRRLAP YPVRIEVLSR FRSPARQRAV LRDLAAGKVD 
IIIGTHRLLS KDVQFKDLGL LIIDEEQRFG VAAKERLRQL RVEVDTLTLT ATPIPRTLQF 
ALMGARDLSI ISTPPPNRQP IVTEIHTFDE TLIRDAIRYE ISRGGQVFFI HNRVQSIYEM 
AARLQAIVPD VRIAVAHGQM KPRELERVMH DFMARKYDVL VSTNIIESGL DIPNANTIII 
NHAEQFGLAD LHQLRGRVGR SDRKAFCYLL VPSIHGLTRE ARQRLQAIEE FSELGSGFSI 
AMRDLDIRGA GNLLGAEQSG FIEEIGFETY QQILDEAIRE LREEEFADVL GAPPPKPPET 
SVDVEADAFI PETYVSSNVE RLNLYRRLSE ATDEAAIEAF REELADRFGP VPPEVDNLLW 
AARLKLLGQA LRLPKVLFKN RRLFLEFPLQ DEDPHFYAHH FMPLLERLSQ LDRRYVLKDQ 
NRKLRAIVQD VPDLETAYQV LRQLQPAEVP VS