Gene Rmar_1088 details

Gene Information

• Locus tag: Rmar_1088
• ID: 8567729
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodothermus marinus DSM 4252
• Kingdom: Bacteria
• Replicon accession: NC_013501
• Strand: -
• Start bp: 1255739
• End bp: 1257778
• Gene Length: 2040 bp
• Protein Length: 679 aa
• Translation table: 11
• GC content: 64%
• Product: TonB-dependent receptor
• Protein accession: YP_003290367
• Protein GI: 268316648

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAACTCC TGTTGTTGCT ACTGCTCCCA CAGGTTGCTA TCGATACAAC CCGGGCGGTG 
CCGCTGCCGC CTGTCGTCGT CACGGCCACC CGCTCGGCAC GGCCGCTGAC CGAAGTGCCC 
GTGCCCACCC AGCTCGTCCC GGCCGAAGCC ATCCGCCAGA GCGGGGCCGC CCGCCTGTCG 
GACCTGCTGG CCGAGCAGCC CGGCCTGTTG CTTTTCGAAG ACCATGGCAC CGGGCTCATG 
ATGCAGGGCT TCGAGCCGGA TTACACGCTG TTTCTGCTAG ACGGCGAGCC GATCATCGGA 
CGCACGGCGG GCACGCTGGA CCTGGATCGC TTCACCGTGC AGGGCCTGGA CCGCATCGAA 
ATCGTACGTG GTCCCACGTC GTCGCTTTAC GGCAGTGAAG CACTGGCTGG GGTGGTTAAC 
TTGATCCGGC ATCGTCCCGA AGCACCGATG GCCACTACCC TGCACGCCCG TATGGAAAGG 
TTCGGGACTT ACCAGCTCGG CGCTACCAGC GAACTGCGAC GCAACCGCCT GGGCGCCACC 
CTGCTGCTTG ACCACTACCG CACCGAAGGC TACGATCTGG CCCCGGAAGT TTTTGGTCCT 
ACTGCTCCTG CGCTGCGCGA CTATACGGCC GATGCCTACC TGACCTGGGA CCTGCCCAGA 
AGCGCTCTGC TATCGGTGGC TGCACGCTAT CACCAACAGC AACAACAAAG CACCTTTGCT 
ATTGATAACG CTCCCCACGC AGAAACCTAT CGCCAGAAGA ACTGGAGCCT GCACCCTCGC 
CTGCAGCAGC AGCTCACCTC TCGCCTGCGG CTTGACGCTT CGCTTTACCT GACAGGGTAC 
GAAACCCATA CCCGCATCAC CCGACAGCAC GACGAGGCCT TGTATTACCA GGATCGATTT 
TCCCAGGCCT ACCGCAAGCT CGAAGTGCGC CTGCAGCAAT TGCTAACAAA CCACCAGCTT 
CTGACACTTG GCAGCGGAGC AGTCCAAGAA GCACTGGAAG GGGATCGCTA TGTCAACCGC 
GTCTCGGCCC GGAGCGGCTT TCTTTTCGCC CAGCATGAAT GGACGCCTCA TCCCTGGCTC 
GAGGTAGTTT CCGGTCTTCG CTTTGATGCC CACAGCGACT ATGCCAGCCG GCTCAGTCCG 
CGCCTGGCGG TGCTGGTCCG CCCTGCTGCC TCCTATCGCC TGCGTGCATC GATCGGAAGT 
GGCTTCAAAG CCCCGGACTT TCGTCAGCGC TATCTGGTGT TTACAAATGC AGCAGCCGGT 
TACAGCGTGT TTGGCGTCAC CCGCTTCCGG GAAGAACTGG CGCGGCTGCA GGCCGAAGGA 
CAGATCGCAC GGCTGCTGAT CGATCCGGCT CGCGTCACCA CGCTGCGGCC GGAAAGCTCC 
GTCGCCTTCA ACCTCGGGGG CGAGGCGACG TGGTTCGACG AGGCGCTGGC GCTGTCGCTC 
AACCTGTTTC ACAACGAAGT GCGCGATCTG ATCGATACGC AACCCGTCGC CCAGAAGACC 
AACCAGGCGT TCGTCTATTC CTACTTCAAC CTGAACCGCA TCTACACCCG GGGTCTGGAA 
GCCACGCTGA CGGCGCGACC CGTGTCGGCG CTCACGCTCA GCCTCAGCTA TCAGTACCTG 
GAGACGGCCG ATCGCGACGT GCTCGAGGCC ATCGACGCGG GACGGCTGTA CGGGCGCACG 
GCGTCGGGCC GCGATTATCG CCTGCGGCGC AGCGACTACG GCGGACTTTT CGGGCGCTCG 
CGCCACAGTG GCACGGTCCA GTTGCGCTGG CAACCCACTT CGCTCGGACT GACCGTGGCG 
CTTCGAGGCG TGTGGCGCAG CCGCTACGGC TATCGCGACG TGGACGGCAA CGGCGTGCCC 
AACCGCGCCG ACGAGTACGT GCCCGGCTAC AGCCTCTGGC ACCTGACCGT CGGACGTCGG 
CTGGGCCGTC ACCTGGAGCT TCAGGGCGGT GCTTTCAACC TGTTCGATCT ACGGCGTCCG 
GCGCTGATGC CCTTCCAGCC CGGTCGCCGC TGGTTTGTGA CGCTCACTGT TCATGTGTAA 

 

Protein sequence

MKLLLLLLLP QVAIDTTRAV PLPPVVVTAT RSARPLTEVP VPTQLVPAEA IRQSGAARLS 
DLLAEQPGLL LFEDHGTGLM MQGFEPDYTL FLLDGEPIIG RTAGTLDLDR FTVQGLDRIE 
IVRGPTSSLY GSEALAGVVN LIRHRPEAPM ATTLHARMER FGTYQLGATS ELRRNRLGAT 
LLLDHYRTEG YDLAPEVFGP TAPALRDYTA DAYLTWDLPR SALLSVAARY HQQQQQSTFA 
IDNAPHAETY RQKNWSLHPR LQQQLTSRLR LDASLYLTGY ETHTRITRQH DEALYYQDRF 
SQAYRKLEVR LQQLLTNHQL LTLGSGAVQE ALEGDRYVNR VSARSGFLFA QHEWTPHPWL 
EVVSGLRFDA HSDYASRLSP RLAVLVRPAA SYRLRASIGS GFKAPDFRQR YLVFTNAAAG 
YSVFGVTRFR EELARLQAEG QIARLLIDPA RVTTLRPESS VAFNLGGEAT WFDEALALSL 
NLFHNEVRDL IDTQPVAQKT NQAFVYSYFN LNRIYTRGLE ATLTARPVSA LTLSLSYQYL 
ETADRDVLEA IDAGRLYGRT ASGRDYRLRR SDYGGLFGRS RHSGTVQLRW QPTSLGLTVA 
LRGVWRSRYG YRDVDGNGVP NRADEYVPGY SLWHLTVGRR LGRHLELQGG AFNLFDLRRP 
ALMPFQPGRR WFVTLTVHV