| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmar_0330 |
|---|
| Symbol | |
|---|
| ID | 8566963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodothermus marinus DSM 4252 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013501 |
|---|
| Strand | - |
|---|
| Start bp | 362795 |
|---|
| End bp | 365920 |
|---|
| Gene Length | 3126 bp |
|---|
| Protein Length | 1041 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | |
|---|
| Product | TonB-dependent outer membrane receptor precursor |
|---|
| Protein accession | YP_003289623 |
|---|
| Protein GI | 268315904 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000673436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTTT GCCTGCTGGG GCTCCCCCTG GCAGGCTATG CCCAGGGTGT GACGACCGCC
GCCCTGACGG GCACGGTCAC CGACGAACGC GGCGACCCCC TGCCGGGCGC CAACGTGGTG
GCCGTGCATG AACCCACCGG CACTCAGTAT GGCACCACCA CCCAGATCGA CGGCCGCTAT
GCGCTGCTGA ACCTGCTGCC CGGCGGCCCC TATACCGTGA CGGTTTCGTT CGTGGGGTAC
CAGACCCGTC GCGAAACCGA CCTGATGCTC CCGCTGGGAC AGACGCGCGT GCTCGACTTC
ACGCTCGCCG AAGCGACCGT AGAACTCCAG GCGCTCGAGG TGGTCGGCGT GCGCAGCTCG
GTACTGAACT CCGACCGCAC AGGCGCCCGC ACCAACATCG ACGAAGCCAC CATCGAGCGG
GTGCCCACCA TCACGCGCAG CCTGGCCGAC TTCACCCGGC TGACCCCTCA GGCCACCGGA
GGCTTTTCGC TGGCCGGCCG CAACAACCGC TACAACAACA TCCAGATCGA CGGCGCCACG
CTCAACGACG TCTTCGGCCT TTCGGGCACC GGGATGCCGG GCGGTCAGGC CGACGCCCAG
CCCATCTCGC TGGACGCCAT CCAGGAGTTC AACATCGACA TTGCCCCCTT TGACGTCCGA
TACAACGGAT TCACCGGCGG ATCCATCAAC GCCGTCACGA AAAGCGGCAC GAATCGTTTG
AGCGGCTCGG TGCGTTACCT GGGCCGTAAC CAGAACTTCG TGGGCGATCT GAAAACACCC
GACGGCGAGA CGGTCCCCTT CGGCGACTTT TCGGAGTACA CGCTGGTAGG CAACCTCGGC
GGCCCCATTC AGCCCAACCG CGCCTTCTTC TTTGTCAACG CGGAATACCA GCGCCGCAAA
ACACCGCTGG ACGTGGGCGT GCAGGGCAGC CGGGCCGCCA CCATCTTTCC GGTAGCACTG
GACTCGCTGA ACCGGATCAT CGAGATAGCG CGCACCCGCT ATGGCTACGA CCCCGGCGGC
TTCGATCCGC TTTCCAACGG TACGGACAAC TTCAAACTGC TGGCCAAAAT CGACTGGAAT
CTGGCGCCCA ACCATCGGCT GACGCTGCGC CACAACTACG TCAATGCCGA CAAGGACGAG
GGCATCAGCC GGGGCACGTT CAGCTTCGAC CTGTCGAACC GGCGCTGGAT CTTCGAAAGC
GTCCAGAATT CGACGGTACT GGAACTGAAG AGCACCTTTG GCACCAATCT GTTCAACGAA
GCGCGGCTGG TCTATACGCG CATCCGGGAT AAGCGGACCG TTAAAGCCCA GCCGTTCCCG
CAGGTGAGCA TTCTGGTGAA CAACCGCTAC ACGGTCAACC TGGGCATTGA CCGCTTCTCC
CAGGCCAATG CGCTGGACCA GGACCTGTGG GAGTTCACCG ACAACCTGAC CTACTTCCGC
GGCAAGCATA CGATCACCGT AGGCACCAGC AACCAGATCT ATCGCTTCAG CAACCTGTTC
ATTCAGGATT ACTACGGCGC CTACGAATTC AACAGCATTG CCGACTTCGA AGCCGGGCGG
CCCTCGCGCT ACTTCTTCAG CTACTCGTTG CTGGATGATC CCAAGCCGCG CGCCGAGTTC
ACGGCCTACC AGCTCGGCTT CTACGTACAG GACCAGTATC AGGCGACGCC TCACCTGAGC
GTGACGGTTG GCCTGCGCGT GGACGTACCG CTGTATCCGG ACAAGCCGCT CTATAACCCG
GCCGTGCCGG AGGCTTTCCC CGGCTACAGC ACCGCCACGA CGGCCAGCGG CAACCTGCTC
TGGTCGCCAC GCCTGGGCTT CAACTGGGAT CTGTCGAAGG GGGCCCGCAC CACCCAGCTC
CGGGGTGGAA CCGGCATCTT CTCGGGCCGC ACGCCCTTCG TATGGATTTC CAACCAGTAC
AGCAACACGG GTGTAGATTT CGGACGCGTC GACGCACGGA ATCTACCCGA AGGCTGCTTT
GTGCCCGAAC CGGATCCCGC CGCCCAGCCG CGTCCGGGCA CCGCGCTGGG TACCACCTGC
GGTCTGGCGC CCATCACGAC CACCGAGGTC AACCTGATCG ACGAGGATTT CAAGTTCCCG
CAGGTCTGGC GTACCGACCT GGCGCTCGAC CAGCAATTGC CCTACGGGCT GATCGGTACC
ATTGAATTCC TCTATTCGAA GACGATCAAC GATGTGGTCT TCGAGAACCT GAACATCGTC
CGGACCGGTA CGGCCCAGGG CGGCCGCGTG CTGTACGGCA CACCGAGCTT CAACGGTTCG
ACCGCCCGCA AAGACCCGCG CTTCACGAAC GCCATCCTGC TCAAAAATAC CGACAAGGGC
TACAGCACGA GCCTGACGGT GGGCGTACAA CGTGAAGCCC AGGCCGAAGG GCTGAGCGGC
GCCCTGTTCT ACACGTGGAA CCGGGCCGAA AACGTCAACA ACGCCACCTC AAGCCGCGCC
ATCTCGAACT GGCAGTACAA CGAAGCCCGC GACGTGAACA ATCCGGAGCT GGGCACGGCC
GACTTCGAGG TGCGCCACCG TATTCTGGCC CACCTGTCCT ATCGCGTGCG CTACCAGCAG
CGCTTTGCCA CCACCGTCAC GCTGATCTAC GAAGGGCGCT CTGGAAGTCC CTTCACCTGG
ATCTACAACG GCAACGCGAA TGCCGACACG CGCCGCGACA ACGATCCGAT CTACGTGCCG
GCCAGCCCGG ACGAGATCGT CTTCACGTCG GACTCGCCCG GCGGCTGGGA CGAACTGAAT
GCCTTCATCG AAAGCGAACC CAGCCTGCGG AAGTACCGCG GCCAGATCGT GCCGCGCAAC
TCGGCCCGGG CTCCCTGGCG TAACCTGCTG GATCTTCAGG TACTCCAGGA GGTCCAGACA
CTGGGCACGC AGCGGCTGGA AATCACCGCC ACGCTCCTGA ACGTGCTCAA CCTGCTCAAC
AGCGACTGGG GCAAGGTTCG CTACACCCTT TTCGATACGG TCCGTCTGAT GGACTTCCAG
GGCTACGACG ATCAGGGCCG GGCCATCGTG CGCTTCACGC CGGTGCAGGA CCGGGACGAT
CTGTTCATCA CAGACGACCT GGCCTCGCGC TGGCAGCTTC AGCTCGGTGT GCGCTACGTG
TTCTAA
|
|---|
| Protein sequence | MLLCLLGLPL AGYAQGVTTA ALTGTVTDER GDPLPGANVV AVHEPTGTQY GTTTQIDGRY
ALLNLLPGGP YTVTVSFVGY QTRRETDLML PLGQTRVLDF TLAEATVELQ ALEVVGVRSS
VLNSDRTGAR TNIDEATIER VPTITRSLAD FTRLTPQATG GFSLAGRNNR YNNIQIDGAT
LNDVFGLSGT GMPGGQADAQ PISLDAIQEF NIDIAPFDVR YNGFTGGSIN AVTKSGTNRL
SGSVRYLGRN QNFVGDLKTP DGETVPFGDF SEYTLVGNLG GPIQPNRAFF FVNAEYQRRK
TPLDVGVQGS RAATIFPVAL DSLNRIIEIA RTRYGYDPGG FDPLSNGTDN FKLLAKIDWN
LAPNHRLTLR HNYVNADKDE GISRGTFSFD LSNRRWIFES VQNSTVLELK STFGTNLFNE
ARLVYTRIRD KRTVKAQPFP QVSILVNNRY TVNLGIDRFS QANALDQDLW EFTDNLTYFR
GKHTITVGTS NQIYRFSNLF IQDYYGAYEF NSIADFEAGR PSRYFFSYSL LDDPKPRAEF
TAYQLGFYVQ DQYQATPHLS VTVGLRVDVP LYPDKPLYNP AVPEAFPGYS TATTASGNLL
WSPRLGFNWD LSKGARTTQL RGGTGIFSGR TPFVWISNQY SNTGVDFGRV DARNLPEGCF
VPEPDPAAQP RPGTALGTTC GLAPITTTEV NLIDEDFKFP QVWRTDLALD QQLPYGLIGT
IEFLYSKTIN DVVFENLNIV RTGTAQGGRV LYGTPSFNGS TARKDPRFTN AILLKNTDKG
YSTSLTVGVQ REAQAEGLSG ALFYTWNRAE NVNNATSSRA ISNWQYNEAR DVNNPELGTA
DFEVRHRILA HLSYRVRYQQ RFATTVTLIY EGRSGSPFTW IYNGNANADT RRDNDPIYVP
ASPDEIVFTS DSPGGWDELN AFIESEPSLR KYRGQIVPRN SARAPWRNLL DLQVLQEVQT
LGTQRLEITA TLLNVLNLLN SDWGKVRYTL FDTVRLMDFQ GYDDQGRAIV RFTPVQDRDD
LFITDDLASR WQLQLGVRYV F
|
|---|
| |