| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001386 |
|---|
| Symbol | |
|---|
| ID | 8559698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 1568621 |
|---|
| End bp | 1571704 |
|---|
| Gene Length | 3084 bp |
|---|
| Protein Length | 1027 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646409055 |
|---|
| Product | cation/multidrug efflux pump |
|---|
| Protein accession | YP_003288534 |
|---|
| Protein GI | 262396681 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA TGGGTATGAT CGCCCTGAAA GTCTTGCCAA TTTCTGAGTA TCCTCAAATC
TCTCCGACGG TAATTACGGT GAGCACCATG TATCCGGGTG CAAACGCGAA CGTGGTTAAA
AAGACGGTTG CACAGCCGAT AGAAGCCAAA GTCAACGGCG TTGAAGACAT GATTTACATG
TCTTCTGTGA TTGGTAACGA TGGTTCATAC ACACTACGTA TCTATTTCCG AGTGGGTGCA
GATGGCGATA TGGCGCAAGT TCGTGTGAAC AACTTGGTGG CGCAAGCGAC GTCTTCTCTC
CCACAAGAAG TAAACCAAAT CGGTGTGACG GTTAAGAAGA AATCTTCTGA CATGTTGGGC
GTTATTACAC TGCGTTCCCC GAAACAGTCT CACGATAGTA TCTACCTCTC TAACTATGCG
GATCTCAATA TTGTTGAGCG TTTAAAACGT ATCGAAGGTA TGAGTGACAT TACGCTGTTG
GGTAAGAAAG ACTACTCAAT GCGTATTTGG TTGAACCCAA ATAAACTGGC CACCTTGAAG
CTTTCCGCTA GTGATGTTAT TGGCGCAATT AAAACGCAAA ACATCCAAGT GGCGGCGGGT
AAGATCGGTG GTATGCCAGC TCCGGGTGAC CAGCAATATC AATATGTTTT GCAAACCAAA
GGTCGACTTA CTTCTGCGGA AGAGTTCGAG AACATCATCA TCCGCGCGAG CAAGAAAGGT
TCTTTGATTC GCTTGAAAGA TGTGGCTCGT GTGGAAGTTG GCGCACAAGG TTACGAAGCT
GATGGTCGTA TGAATAACGA ACCAGCCGCC GTTCTGGCCT TGTACCAGTT GCCGACAGCG
AACGCGCTAG ACGTGATGGA ACGCGTGAAA GAGGCCATGA AAGAGTACGA GAAATCGTTC
CCAGATGATT TGGTCTACGA CATCGCGTAT GACTCTACCG AATACGTAGA GACGTCTATT
GATGAAGTGT ACGAGACACT GGTGATTGCG GTACTTCTTG TCACCTTCGT TGTGTACGTT
TTCTTGCAGA ACTGGCGAGC GACCATCATT CCAACCTTAG CGATTCCGGT TTCCATCATT
GCGACGTTCG CAATCATGGG CGTGATGGGC ATGACCATTA ACACCATCTC GTTGTTTGGC
TTGATCCTCG CCATCGGTAT CGTGGTGGAC GATGCGATCA TCGTGGTGGA GAACGTGGAG
CGGGTTATCC ATGAAGAGCA TTTAGACCCG ATTCCGGCCA CGATCCAAGC CATGAAAGAA
GTGACGGGTC CTGTATTGGC AACAACGCTT ATTTTGTTGG CGGTATTCGT ACCGGTTGCG
CTATTGCCGG GTATTTCTGG TCGAATGTTC AACCAGTTCG CGGTCACCAT CTGTGTGTCG
GTGCTGATCT CTGCGATCAA CGCATTAACG TTAACGCCAG CGCTTTGTGC GTTGATGTTG
AAATCTACTC ACTCGCAACC TATTGCGCCT TTGCGTGCGT TTAACCGAGG TTTTGAAGCA
ATAACGCGCA AATACCAAGG TTTAGTTGGC TTCTTGAGCC GCCGCATTGT GCTGAGTATC
GGTGTGTATG GCGCGCTTAT TGCGGTGCTG GCGTTTGCGT TCATGACCGT ACCTTCTTCT
TTCGTACCGA ACGAAGATAA AGGCGTGTTC ATGGTCGAAA TGCGTTTGCC AGACGCATCA
GCATTGCAGC GTACTGCACC ATTAATGAAG AAGTACGTTG ATGAGCTAAA ACAGATGGAA
GGTGTGGAGA ACGTGGTTTC GGTTGCGGGC TTCTCGGTAA TTAACATGGC GTCGATTCCA
AACTCGGGCA TGTTGATCAT CAAACTGGAT AACTGGAGCA AACGTAAAGC CCCTGAGCTA
CACCAACGCG CATTGATGAA TAAAGTTAAC CAAATGCTGA ACTCAACGCC AGATGCCGCT
TCGTTCGTTT TCGCGACGCC GGCAATCAAA GGCATGGGTG CGGTGGATGG TTTCAACCTT
GTGCTGCAAG ACAACTTGGG CCGTTCTCCA CAAGAGTTGG CAAAAACAAC CGCTGATTTT
GTTGCCCAAA TCAATCAACT GCCAGAAGTG GCGCGTGCGT TCTCGATTTT CCGTGCGAAC
ATTCCGCAAC GTTACATCGA TATTGACCGC GATAAAGCGA TTTCGATGGG CGTACCGTTG
AATGAAATCT TCAGCACACT GCAAGCACAG TTGGGCGGTG CCTACATTTC TGACTTCAAC
TTGTTTGGTC GTTCGTACCA AGTGAAAGTG CAAGCAGAAG AGCAATACCG TGACAACATC
GACGACATCG ACCATCTGTT TGTTCGTTCT AGCTCTGGAA AAATGGTGTC ACTGGCAACG
CTAGTGAAAG TGAAGCCGAT CTTCGGCCCT GATACCTTGT CGAACTACAA CATGTTCAGT
TCTGCAACCG TGAACGGTGC GCCAGCGCCA GGTTACAGCT CGGGTGATGT TGTAAAAGCC
ATTGAAAAAC TGGCTGCAGA GTCTTTGCCA AGTGGTTACT CGTACGAGTG GTCAGGCATG
ACTTACCAAG AGATGAAAGC AGGCAACATG GCACCAATCG CGTTCGCATT GTCTTTGCTG
TTCACCTACT TGTTCTTGGT GGCTCAGTAC GAAAGTTGGA CTATTCCTGC TGCGGTAATG
ATGGCGGTTC CAGTCGCGAT TCTCGGCGCA ATGGGCACGC TACTGCTGGT GGGACAACCG
TTCGATTTGT ACGTGCAGAT TGGTGTGGTC ATCTTGATCG GTATGTCCGC CAAAGTGGCG
ATTCTTATCG TGGAATTTGC CAAAGTTCTG CGAGAAGAAA AGGGCTTATC CATCATTGAT
GCTGCCAAAG AAGCTGCTCG AATCCGTTTC CGAGCAGTAC AGATGACCGC ATTCGCCTTC
ATCTGGGGGG TATTCCCGTT GGTGATTGCA TCGGGTGCTG GTGCGGCATC TCGTCACTCA
CTGGGCTTTG CGGTATTCGG CGGCATGATT CTCTCTACGT TTGTAGGCAC GTTGCTGACG
CCAGTGTTCT TCGTGATGAT GCAATCTCTG CGCGAGAAGT TTAAGCGAAA GAAACCCACT
CAACTTGAGG TGAGCGAGCA ATAA
|
|---|
| Protein sequence | MTLMGMIALK VLPISEYPQI SPTVITVSTM YPGANANVVK KTVAQPIEAK VNGVEDMIYM
SSVIGNDGSY TLRIYFRVGA DGDMAQVRVN NLVAQATSSL PQEVNQIGVT VKKKSSDMLG
VITLRSPKQS HDSIYLSNYA DLNIVERLKR IEGMSDITLL GKKDYSMRIW LNPNKLATLK
LSASDVIGAI KTQNIQVAAG KIGGMPAPGD QQYQYVLQTK GRLTSAEEFE NIIIRASKKG
SLIRLKDVAR VEVGAQGYEA DGRMNNEPAA VLALYQLPTA NALDVMERVK EAMKEYEKSF
PDDLVYDIAY DSTEYVETSI DEVYETLVIA VLLVTFVVYV FLQNWRATII PTLAIPVSII
ATFAIMGVMG MTINTISLFG LILAIGIVVD DAIIVVENVE RVIHEEHLDP IPATIQAMKE
VTGPVLATTL ILLAVFVPVA LLPGISGRMF NQFAVTICVS VLISAINALT LTPALCALML
KSTHSQPIAP LRAFNRGFEA ITRKYQGLVG FLSRRIVLSI GVYGALIAVL AFAFMTVPSS
FVPNEDKGVF MVEMRLPDAS ALQRTAPLMK KYVDELKQME GVENVVSVAG FSVINMASIP
NSGMLIIKLD NWSKRKAPEL HQRALMNKVN QMLNSTPDAA SFVFATPAIK GMGAVDGFNL
VLQDNLGRSP QELAKTTADF VAQINQLPEV ARAFSIFRAN IPQRYIDIDR DKAISMGVPL
NEIFSTLQAQ LGGAYISDFN LFGRSYQVKV QAEEQYRDNI DDIDHLFVRS SSGKMVSLAT
LVKVKPIFGP DTLSNYNMFS SATVNGAPAP GYSSGDVVKA IEKLAAESLP SGYSYEWSGM
TYQEMKAGNM APIAFALSLL FTYLFLVAQY ESWTIPAAVM MAVPVAILGA MGTLLLVGQP
FDLYVQIGVV ILIGMSAKVA ILIVEFAKVL REEKGLSIID AAKEAARIRF RAVQMTAFAF
IWGVFPLVIA SGAGAASRHS LGFAVFGGMI LSTFVGTLLT PVFFVMMQSL REKFKRKKPT
QLEVSEQ
|
|---|
| |