| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001326 |
|---|
| Symbol | |
|---|
| ID | 8559638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 1510235 |
|---|
| End bp | 1511635 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646408995 |
|---|
| Product | Capsular polysaccharide synthesis enzyme CpsA sugar transferase |
|---|
| Protein accession | YP_003288474 |
|---|
| Protein GI | 262396621 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR03023] Undecaprenyl-phosphate glucose phosphotransferase
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.183257 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA AAGGACTTAT CCGCTCTCAC GAGATGGAGT TCGCTTTTTT ATATCGCATC
TCAGATCTTG CTGTCATCGT CTCTTTTATG CTGCTTTTAG TGTTCAAAGA CATGAATACT
GCGATGGGGA AAGATTACGT CATACTGGCT TTTGTTGGAG GCATCTCCTT TCTATTTATG
GCAGAAAGCG GCAATCTGTA CCGCTCTTGG CGAACCAGTT CGTTTAAAGA GCAGATGATT
ATTGTCTGTG TGGCCTGGGC AGTAACTTCC GCGCTTATCT TTATTGTTCT GTATTTTTCG
GAAGTCTATG ACTTATTTGA TAACACTATT CTGGCATTGT GGTTTGCGAT TACGCCCGCT
CTACTTTTGG CATGGCGAGT GACATTCCGT ACCGGATTAG CCTATTTAAG AAAAAAAGGA
TTCAACACTC GTACTGCAAT AATCATCGGC CAAACTCCTC ACGGCATTAC CCTTGCTAAC
GAAATTCAAA ACCACACTGA ACACGGTGTA CTTTTTGATG GCTTTTACGA TGAGCGTTCT
TCCGACAGAT TGCCAAATTC TGCTTACTCT ATTAAAGGGG CAGTTGACCA CGCTCTTGAG
CGAGCCAAGA AAGGGGAAGT GGATTACGTC TATATCGCAA TGCCAATGCA CGCAAAAGAA
CGTATTGCAT CGCTTCTTAA CCAATTCTCA GACACCACCG CAAATACGTA TCTGATTCCT
GACTTCTTTA CCTATAACCT TTTGCATTCT CGTTGGGCGC AAATCGGCCA AGTTCAAACG
CTCAGCGTAT TTGATACGCC ATTTGCTGGA ATTTCTTCCT GGGTAAAACG GTTTGAAGAC
ATCTTGTTTT CGAGCATTAT TTTAGCCTTG ATATCTCCAG TCCTGCTCAC CATTGCGATT
GGCATTAAGC TGACCTCTAA AGGTCCGGTC ATTTTTAAAC AGCATCGTTA CGGCCTCGAT
GGACGCAAGA TTGAAGTATG GAAATTCCGT TCAATGACCA CTATGGATCA AGGCCCTCAC
GTGAAACAGG CGACAAAGAA CGACCCACGC ATTACGCCTT TTGGTGGTTT TCTGCGTCGC
ACCTCTTTGG ACGAACTGCC TCAATTTATC AATGTACTGC AAGGGACCAT GTCTATTGTT
GGTCCACGCC CTCACGCCGT GGCGCACAAT GAAGAGTATC GCCAGATTGT TGACCGCTAC
ATGCTACGTC ACAAAGTAAA ACCAGGCATT ACTGGCTGGG CGCAAATTAA TGGCTATCGC
GGCGAAACAG ACACCTTAGA AAAAATGGAA AAGAGAGTCG AGTTTGATTT GGATTACATC
CACCACTGGT CGGTTTGGAT GGACATCAAA ATCATCTTCA TGACCGTTTT CAAAGGGTTC
ACTGGTGCTA ACGCTTACTA A
|
|---|
| Protein sequence | MKQKGLIRSH EMEFAFLYRI SDLAVIVSFM LLLVFKDMNT AMGKDYVILA FVGGISFLFM
AESGNLYRSW RTSSFKEQMI IVCVAWAVTS ALIFIVLYFS EVYDLFDNTI LALWFAITPA
LLLAWRVTFR TGLAYLRKKG FNTRTAIIIG QTPHGITLAN EIQNHTEHGV LFDGFYDERS
SDRLPNSAYS IKGAVDHALE RAKKGEVDYV YIAMPMHAKE RIASLLNQFS DTTANTYLIP
DFFTYNLLHS RWAQIGQVQT LSVFDTPFAG ISSWVKRFED ILFSSIILAL ISPVLLTIAI
GIKLTSKGPV IFKQHRYGLD GRKIEVWKFR SMTTMDQGPH VKQATKNDPR ITPFGGFLRR
TSLDELPQFI NVLQGTMSIV GPRPHAVAHN EEYRQIVDRY MLRHKVKPGI TGWAQINGYR
GETDTLEKME KRVEFDLDYI HHWSVWMDIK IIFMTVFKGF TGANAY
|
|---|
| |